Gene Enrichment Profiler

Mapping of probe set 216471_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	X79200
  Chromosomal Location	chrXp11.22
  UniGene ID	Hs.289105
  Gene Symbol	LOC100130648, SSX2, SSX2B
  Ensembl	ENSG00000157950, ENSG00000187754
  Entrez Gene	100130648, 6757, 727837
  SwissProt	Q15532, Q16385, Q8WWZ9, Q9NZK4, Q9Y444
  RefSeq Transcript ID	NM_003147, NM_175698, XM_001719568, XM_001720499

• Annotation based on mapping results:

  This probe is not unique and matches SSX1, SSX2, SSX5, SSX4, SSX6, SSX7, SSX9, SSX3.

  Only 7/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 13 alternative probes: (1) 206626_x_at, (2) 206627_s_at, (3) 207493_x_at, (4) 207666_x_at, (5) 208528_x_at, (6) 208586_s_at, (7) 210394_x_at, (8) 210497_x_at, (9) 211425_x_at, (10) 211670_x_at, (11) 211731_x_at, (12) 215881_x_at, (13) 216471_x_at.

  Affymetrix annotation for this probe: SSX2B, SSX2, LOC100130648.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
216471_x_at_1	52803726	52803751	+	25/25	uc004drb.1 SSX2 6 uc004dra.1 SSX2 6
	48133802	48133827	+	24/25	uc004djf.1 SSX4 6
	47958955	47958979	+	23/25
	48176532	48176556	+	22/25		This probe is not considered a match. Only 22/25 matches found
	52746257	52746282	-	25/25	uc004dqz.1 SSX2 6 uc004dqy.1 SSX2 6
	48150369	48150394	-	24/25	uc004djh.1 SSX4 6
	48094405	48094429	-	23/25	uc004dje.1 SSX3 6 uc004djd.1 SSX3 6
	48044050	48044074	-	23/25	uc010nib.1 SSX9 6
216471_x_at_2	52806167	52806192	+	25/25	uc004drb.1 SSX2 7 uc004dra.1 SSX2 8
	52722747	52722772	+	25/25
	52678587	52678612	+	25/25
	48184863	48184888	+	25/25
	48136276	48136301	+	25/25	uc004djg.1 SSX4 6 uc004djf.1 SSX4 7
	48010687	48010712	+	25/25	uc004djb.1 SSX1 7
	47863881	47863906	+	25/25	uc004dix.1 SSX6 7
	48070979	48071004	+	24/25
	47961259	47961284	+	24/25
	52827279	52827304	-	25/25
	52743816	52743841	-	25/25	uc004dqz.1 SSX2 7 uc004dqy.1 SSX2 8
	52691271	52691296	-	25/25	uc004dqx.1 SSX7 7
	48147895	48147920	-	25/25	uc004djh.1 SSX4 7 uc004dji.1 SSX4 6
	48091936	48091961	-	25/25	uc004djd.1 SSX3 7
	48041252	48041277	-	25/25	uc010nib.1 SSX9 7
	47932064	47932089	-	24/25	uc004diz.1 SSX5 8 uc004dja.1 SSX5 7
216471_x_at_3
216471_x_at_4	48011262	48011287	+	25/25	uc004djb.1 SSX1 8
	48137171	48137196	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47864455	47864480	+	25/25	uc004dix.1 SSX6 8
	52806745	52806770	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48185740	48185765	+	25/25
	52723644	52723668	+	24/25
	47961838	47961863	+	24/25
	47910163	47910188	+	24/25
	52679162	52679187	+	24/25
	52835495	52835520	+	24/25
	48071886	48071911	+	24/25
	52743238	52743263	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690390	52690415	-	25/25	uc004dqx.1 SSX7 8
	48147000	48147025	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091359	48091384	-	25/25	uc004djd.1 SSX3 8
	47931181	47931206	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52826342	52826366	-	24/25
	48040369	48040394	-	24/25	uc010nib.1 SSX9 8
216471_x_at_5	48011277	48011302	+	25/25	uc004djb.1 SSX1 8
	48185755	48185780	+	25/25
	48137186	48137211	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47910178	47910203	+	25/25
	52679177	52679202	+	25/25
	47961853	47961878	+	25/25
	52806760	52806785	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864470	47864495	+	24/25	uc004dix.1 SSX6 8
	48071901	48071926	+	24/25
	52835510	52835535	+	24/25
	52743223	52743248	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690375	52690400	-	25/25	uc004dqx.1 SSX7 8
	48146985	48147010	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091344	48091369	-	25/25	uc004djd.1 SSX3 8
	47931166	47931191	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	48040354	48040379	-	24/25	uc010nib.1 SSX9 8
216471_x_at_6	52835541	52835566	+	25/25
	48137217	48137242	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52806791	52806816	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52723690	52723715	+	25/25
	52649531	52649556	+	25/25
	48185786	48185811	+	25/25
	52679208	52679232	+	24/25
	48011309	48011333	+	24/25	uc004djb.1 SSX1 8
	47864501	47864526	+	24/25	uc004dix.1 SSX6 8
	47961884	47961909	+	24/25
	52826295	52826320	-	25/25
	52743192	52743217	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690344	52690369	-	25/25	uc004dqx.1 SSX7 8
	48146954	48146979	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091313	48091338	-	25/25	uc004djd.1 SSX3 8
	48040323	48040348	-	25/25	uc010nib.1 SSX9 8
	47931135	47931159	-	23/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
216471_x_at_7	52679264	52679289	+	25/25
	47864558	47864583	+	25/25	uc004dix.1 SSX6 8
	48071989	48072014	+	25/25
	52649588	52649613	+	25/25
	47961941	47961966	+	25/25
	48137274	48137299	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52723747	52723772	+	25/25
	48011364	48011389	+	25/25	uc004djb.1 SSX1 8
	52806848	52806873	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48185843	48185868	+	24/25
	47910265	47910290	+	24/25
	52835598	52835623	+	23/25
	52826238	52826263	-	25/25
	52743135	52743160	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48146897	48146922	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091256	48091281	-	25/25	uc004djd.1 SSX3 8
	47931078	47931103	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
216471_x_at_8	52806974	52806999	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48072116	48072140	+	24/25
	52649715	52649739	+	24/25
	47910390	47910414	+	24/25
	52835725	52835749	+	24/25
	52723874	52723898	+	24/25
	48011491	48011514	+	23/25	uc004djb.1 SSX1 8
	52679391	52679414	+	23/25
	47864688	47864709	+	21/25	uc004dix.1 SSX6 8	This probe is not considered a match. Only 21/25 matches found
	48137404	48137425	+	21/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8	This probe is not considered a match. Only 21/25 matches found
	48185974	48185995	+	21/25		This probe is not considered a match. Only 21/25 matches found
	52743009	52743034	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48091130	48091155	-	25/25	uc004djd.1 SSX3 8
	52826112	52826136	-	24/25
	52690161	52690185	-	24/25	uc004dqx.1 SSX7 8
	48040142	48040166	-	24/25	uc010nib.1 SSX9 8
	47930952	47930975	-	23/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	48146771	48146792	-	21/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7	This probe is not considered a match. Only 21/25 matches found
216471_x_at_9	52807010	52807035	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52742973	52742998	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48091094	48091119	-	24/25	uc004djd.1 SSX3 8
216471_x_at_10	52807026	52807051	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52742957	52742982	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48091078	48091103	-	25/25	uc004djd.1 SSX3 8
216471_x_at_11	52835801	52835826	+	25/25
	52807050	52807075	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864761	47864786	+	25/25	uc004dix.1 SSX6 8
	48186047	48186072	+	25/25
	48137477	48137502	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52679467	52679492	+	25/25
	52649791	52649816	+	25/25
	48011567	48011592	+	25/25	uc004djb.1 SSX1 8
	47962140	47962165	+	25/25
	47910466	47910491	+	25/25
	52723950	52723975	+	24/25
	48072192	48072217	+	24/25
	52742933	52742958	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690084	52690109	-	25/25	uc004dqx.1 SSX7 8
	48146694	48146719	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	52826035	52826060	-	24/25
	48091054	48091079	-	24/25	uc004djd.1 SSX3 8
	48040065	48040090	-	24/25	uc010nib.1 SSX9 8

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