Gene Enrichment Profiler

Mapping of probe set 211670_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	S82471
  Chromosomal Location	chrXp11.23
  UniGene ID	Hs.558445
  Gene Symbol	SSX3
  Ensembl	ENSG00000165584
  Entrez Gene	10214
  SwissProt	Q5JQZ4, Q99909, Q9BRW7
  RefSeq Transcript ID	NM_021014, NM_175711

• Annotation based on mapping results:

  This probe is not unique and matches SSX5, SSX9, SSX2, SSX3.

  Only 8/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 11 alternative probes: (1) 206626_x_at, (2) 207493_x_at, (3) 207666_x_at, (4) 208528_x_at, (5) 210394_x_at, (6) 210497_x_at, (7) 211425_x_at, (8) 211670_x_at, (9) 211731_x_at, (10) 215881_x_at, (11) 216471_x_at.

  Affymetrix annotation for this probe: SSX3.

  Brainarray annotation for this probe: SSX3.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
211670_x_at_1	48098436	48098461	-	25/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938567	47938591	-	23/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
211670_x_at_2	48098414	48098439	-	25/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938545	47938570	-	24/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
211670_x_at_3
211670_x_at_4	52801605	52801629	+	24/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	48131700	48131724	+	24/25	uc004djg.1 SSX4 5 uc004djf.1 SSX4 5
	52718498	52718520	+	22/25		This probe is not considered a match. Only 22/25 matches found
	48006151	48006172	+	21/25	uc004djb.1 SSX1 5	This probe is not considered a match. Only 21/25 matches found
	47957177	47957198	+	21/25		This probe is not considered a match. Only 21/25 matches found
	52748377	52748401	-	24/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
	48152473	48152497	-	24/25	uc004djh.1 SSX4 5 uc004dji.1 SSX4 5
	48096500	48096524	-	24/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	52831527	52831549	-	22/25		This probe is not considered a match. Only 22/25 matches found
	48046113	48046137	-	23/25	uc010nib.1 SSX9 5
	47936633	47936654	-	21/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5	This probe is not considered a match. Only 21/25 matches found
	52654436	52654458	-	21/25		This probe is not considered a match. Only 21/25 matches found
211670_x_at_5	52801620	52801645	+	24/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	47905326	47905351	+	24/25
	47957189	47957214	+	23/25
	48096484	48096509	-	25/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	48046097	48046122	-	25/25	uc010nib.1 SSX9 5
	47936617	47936642	-	25/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5
	52748361	52748386	-	24/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
211670_x_at_6
211670_x_at_7	48176529	48176554	+	25/25
	47958952	47958977	+	25/25
	48133800	48133825	+	24/25	uc004djf.1 SSX4 6
	47861406	47861431	+	23/25	uc004dix.1 SSX6 6
	48094407	48094432	-	25/25	uc004dje.1 SSX3 6 uc004djd.1 SSX3 6
	48044052	48044077	-	25/25	uc010nib.1 SSX9 6
	52652359	52652384	-	24/25
	48150371	48150396	-	24/25	uc004djh.1 SSX4 6
	52746259	52746284	-	23/25	uc004dqz.1 SSX2 6 uc004dqy.1 SSX2 6
	47934555	47934579	-	22/25	uc004diz.1 SSX5 7 uc004dja.1 SSX5 6	This probe is not considered a match. Only 22/25 matches found
211670_x_at_8	52806167	52806192	+	25/25	uc004drb.1 SSX2 7 uc004dra.1 SSX2 8
	52722747	52722772	+	25/25
	52678587	52678612	+	25/25
	48184863	48184888	+	25/25
	48136276	48136301	+	25/25	uc004djg.1 SSX4 6 uc004djf.1 SSX4 7
	48010687	48010712	+	25/25	uc004djb.1 SSX1 7
	47863881	47863906	+	25/25	uc004dix.1 SSX6 7
	48070979	48071004	+	24/25
	47961259	47961284	+	24/25
	52827279	52827304	-	25/25
	52743816	52743841	-	25/25	uc004dqz.1 SSX2 7 uc004dqy.1 SSX2 8
	52691271	52691296	-	25/25	uc004dqx.1 SSX7 7
	48147895	48147920	-	25/25	uc004djh.1 SSX4 7 uc004dji.1 SSX4 6
	48091936	48091961	-	25/25	uc004djd.1 SSX3 7
	48041252	48041277	-	25/25	uc010nib.1 SSX9 7
	47932064	47932089	-	24/25	uc004diz.1 SSX5 8 uc004dja.1 SSX5 7
211670_x_at_9	48091405	48091894	-	25/25	uc004djd.1 SSX3 7, 8	This probe is not considered a match. Chr gap bases = 464
211670_x_at_10	52679136	52679161	+	25/25
	52649459	52649484	+	25/25
	48137145	48137170	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47961812	47961837	+	25/25
	48071861	48071885	+	24/25
	47910138	47910162	+	24/25
	52723618	52723643	+	24/25
	48185714	48185739	+	24/25
	52835469	52835494	+	24/25
	47864430	47864454	+	23/25	uc004dix.1 SSX6 8
	52806720	52806744	+	23/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48147026	48147051	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091385	48091410	-	25/25	uc004djd.1 SSX3 8
	47931207	47931232	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52826367	52826392	-	24/25
	48040395	48040420	-	24/25	uc010nib.1 SSX9 8
	52743264	52743288	-	23/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690416	52690441	-	23/25	uc004dqx.1 SSX7 8
211670_x_at_11	48011275	48011300	+	25/25	uc004djb.1 SSX1 8
	48185753	48185778	+	25/25
	48137184	48137209	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47910176	47910201	+	25/25
	52679175	52679200	+	25/25
	47961851	47961876	+	25/25
	52806758	52806783	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864468	47864493	+	24/25	uc004dix.1 SSX6 8
	48071899	48071924	+	24/25
	52835508	52835533	+	24/25
	52743225	52743250	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690377	52690402	-	25/25	uc004dqx.1 SSX7 8
	48146987	48147012	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091346	48091371	-	25/25	uc004djd.1 SSX3 8
	47931168	47931193	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	48040356	48040381	-	24/25	uc010nib.1 SSX9 8

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