Gene Enrichment Profiler

Mapping of probe set 215881_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	BF184274
  Chromosomal Location	chrXp11.22, chrXp11.23, chrXp11.23-p11.22
  UniGene ID	Hs.434142
  Gene Symbol	LOC100130648, SSX1, SSX10, SSX2, SSX2B, SSX3, SSX5, SSX7, SSX9
  Ensembl	ENSG00000126752, ENSG00000157950, ENSG00000165583, ENSG00000165584, ENSG00000185319, ENSG00000187754, ENSG00000204368, ENSG00000204648
  Entrez Gene	100128582, 100130648, 10214, 280658, 280660, 6756, 6757, 6758, 727837
  SwissProt	A3KN76, A6NEJ1, O60225, Q15532, Q16384, Q16385, Q5JQ60, Q5JQZ4, Q7RTT3, Q7RTT4, Q7RTT5, Q8WWZ9, Q99909, Q9BRW7, Q9NZK4, Q9Y444
  RefSeq Transcript ID	NM_003147, NM_005635, NM_021014, NM_021015, NM_173358, NM_174962, NM_175698, NM_175711, NM_175723, XM_001714824, XM_001719568, XM_001720499

• Annotation based on mapping results:

  This probe is not unique and matches SSX2, SSX3.

  Only 6/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 11 alternative probes: (1) 206626_x_at, (2) 207493_x_at, (3) 207666_x_at, (4) 208528_x_at, (5) 210394_x_at, (6) 210497_x_at, (7) 211425_x_at, (8) 211670_x_at, (9) 211731_x_at, (10) 215881_x_at, (11) 216471_x_at.

  Affymetrix annotation for this probe: SSX5, LOC100130648, SSX9, SSX1, SSX2, SSX3, SSX7, SSX10, SSX2B.

  Brainarray annotation for this probe: SSX3.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
215881_x_at_1	48098436	48098461	-	25/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938567	47938591	-	23/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
215881_x_at_2	48098414	48098439	-	25/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938545	47938570	-	24/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
215881_x_at_3
215881_x_at_4	48131699	48131724	+	25/25	uc004djg.1 SSX4 5 uc004djf.1 SSX4 5
	52801604	52801629	+	25/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	47957173	47957198	+	24/25
	47857522	47857547	+	24/25	uc004dix.1 SSX6 5
	52718495	52718520	+	24/25
	52674025	52674050	+	24/25
	47905310	47905335	+	24/25
	48006147	48006172	+	24/25	uc004djb.1 SSX1 5
	52649033	52649411	+	25/25		This probe is not considered a match. Chr gap bases = 353
	52748377	52748402	-	25/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
	48152473	48152498	-	25/25	uc004djh.1 SSX4 5 uc004dji.1 SSX4 5
	48096500	48096525	-	25/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	52831527	52831552	-	24/25
	48046113	48046138	-	24/25	uc010nib.1 SSX9 5
	47936633	47936658	-	24/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5
	52654436	52654461	-	23/25
215881_x_at_5	52801620	52801645	+	24/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	47905326	47905351	+	24/25
	47957189	47957214	+	23/25
	48096484	48096509	-	25/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	48046097	48046122	-	25/25	uc010nib.1 SSX9 5
	47936617	47936642	-	25/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5
	52748361	52748386	-	24/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
215881_x_at_6
215881_x_at_7	52805328	52805353	+	25/25	uc004dra.1 SSX2 7
	52744655	52744680	-	25/25	uc004dqy.1 SSX2 7
	48092776	48092801	-	25/25	uc004dje.1 SSX3 8
	48042421	48042446	-	24/25	uc010nib.1 SSX9 in intron
215881_x_at_8	47863062	47863087	+	25/25	uc004dix.1 SSX6 in intron
	47908472	47908497	+	25/25
	47960474	47960499	+	25/25
	48070170	48070195	+	25/25
	48135461	48135486	+	25/25	uc004djg.1 SSX4 in intron uc004djf.1 SSX4 in intron
	52805353	52805378	+	25/25	uc004dra.1 SSX2 7
	52677773	52677798	+	25/25
	7648760	7648785	+	25/25
	48184048	48184073	+	25/25
	52721937	52721962	+	25/25
	154617210	154617235	+	25/25
	139614796	139614820	+	24/25
	16226640	16226665	+	24/25
	80127865	80127890	+	24/25
	72610778	72610803	+	24/25
	8163424	8163449	+	24/25
	75919811	75919836	-	25/25	uc010nlv.1   in intron
	72240633	72240658	-	25/25
	52650702	52650727	-	25/25
	52744630	52744655	-	25/25	uc004dqy.1 SSX2 7
	52828089	52828114	-	25/25
	48148710	48148735	-	25/25	uc004djh.1 SSX4 in intron uc004dji.1 SSX4 in intron
	27591607	27591631	-	24/25
	7069042	7069067	-	24/25	uc004crv.1 HDHD1A in intron uc010ndl.1 HDHD1A in intron
	12075997	12076020	-	23/25	uc004cuz.1 FRMPD4 in intron
	78030395	78030420	-	24/25
	152061164	152061189	-	24/25
	145603374	145603399	-	24/25
	75831346	75831371	-	24/25	uc010nlv.1   in intron
	52692421	52692446	-	24/25	uc004dqx.1 SSX7 in intron
	110208402	110208427	-	24/25	uc010npt.1 PAK3 in intron uc004eoy.1 PAK3 in intron uc010npu.1 PAK3 in intron
	47932901	47932926	-	24/25	uc004diz.1 SSX5 in intron uc004dja.1 SSX5 in intron
215881_x_at_9	52805403	52805428	+	25/25	uc004dra.1 SSX2 7
	48184098	48184123	+	25/25
	48135511	48135536	+	24/25	uc004djg.1 SSX4 in intron uc004djf.1 SSX4 in intron
	52744580	52744605	-	25/25	uc004dqy.1 SSX2 7
	48148660	48148685	-	24/25	uc004djh.1 SSX4 in intron uc004dji.1 SSX4 in intron
	48092701	48092726	-	24/25	uc004dje.1 SSX3 8
	22501893	22501918	-	24/25
	48042349	48042371	-	22/25	uc010nib.1 SSX9 in intron	This probe is not considered a match. Only 22/25 matches found
215881_x_at_10	52806167	52806192	+	25/25	uc004drb.1 SSX2 7 uc004dra.1 SSX2 8
	52722747	52722772	+	25/25
	52678587	52678612	+	25/25
	48184863	48184888	+	25/25
	48136276	48136301	+	25/25	uc004djg.1 SSX4 6 uc004djf.1 SSX4 7
	48010687	48010712	+	25/25	uc004djb.1 SSX1 7
	47863881	47863906	+	25/25	uc004dix.1 SSX6 7
	48070979	48071004	+	24/25
	47961259	47961284	+	24/25
	52827279	52827304	-	25/25
	52743816	52743841	-	25/25	uc004dqz.1 SSX2 7 uc004dqy.1 SSX2 8
	52691271	52691296	-	25/25	uc004dqx.1 SSX7 7
	48147895	48147920	-	25/25	uc004djh.1 SSX4 7 uc004dji.1 SSX4 6
	48091936	48091961	-	25/25	uc004djd.1 SSX3 7
	48041252	48041277	-	25/25	uc010nib.1 SSX9 7
	47932064	47932089	-	24/25	uc004diz.1 SSX5 8 uc004dja.1 SSX5 7
215881_x_at_11	52806240	52806730	+	25/25	uc004drb.1 SSX2 7, 8 uc004dra.1 SSX2 8, 9	This probe is not considered a match. Chr gap bases = 465
	52743278	52743768	-	25/25	uc004dqz.1 SSX2 7, 8 uc004dqy.1 SSX2 8, 9	This probe is not considered a match. Chr gap bases = 465

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