Gene Enrichment Profiler

Mapping of probe set 210394_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	BC005325
  Chromosomal Location	chrXp11.23
  UniGene ID	Hs.648298
  Gene Symbol	SSX4, SSX4B
  Ensembl	ENSG00000198946, ENSG00000204645
  Entrez Gene	548313, 6759
  SwissProt	A8MYD4, B2RPE3, O60224, Q3SYD4
  RefSeq Transcript ID	NM_001034832, NM_001040612, NM_005636, NM_175729, XM_001725018

• Annotation based on mapping results:

  This probe is not unique and matches SSX1, SSX2, SSX3, SSX4, SSX6, SSX9.

  Only 6/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 13 alternative probes: (1) 206626_x_at, (2) 206627_s_at, (3) 207493_x_at, (4) 207666_x_at, (5) 208528_x_at, (6) 208586_s_at, (7) 210394_x_at, (8) 210497_x_at, (9) 211425_x_at, (10) 211670_x_at, (11) 211731_x_at, (12) 215881_x_at, (13) 216471_x_at.

  Affymetrix annotation for this probe: SSX4, SSX4B.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
210394_x_at_1	52807102	52807127	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48011619	48011644	+	25/25	uc004djb.1 SSX1 8
	47864813	47864838	+	25/25	uc004dix.1 SSX6 8
	48186099	48186124	+	25/25
	48137529	48137554	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52724002	52724028	+	25/25
	48072244	48072266	+	22/25		This probe is not considered a match. Only 22/25 matches found
	47962192	47962214	+	22/25		This probe is not considered a match. Only 22/25 matches found
	52649843	52649876	+	25/25		This probe is not considered a match. Chr gap bases = 8
	52742881	52742906	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48146642	48146667	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091002	48091027	-	25/25	uc004djd.1 SSX3 8
	48040013	48040038	-	24/25	uc010nib.1 SSX9 8
	47930823	47930848	-	24/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52825988	52826008	-	20/25		This probe is not considered a match. Only 20/25 matches found
210394_x_at_2	48137578	48137603	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011673	48011698	+	25/25	uc004djb.1 SSX1 8
	47910571	47910596	+	25/25
	47864862	47864887	+	25/25	uc004dix.1 SSX6 8
	52835924	52835948	+	24/25
	52807192	52807217	+	24/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52679573	52679598	+	24/25
	48186148	48186173	+	24/25
	47962239	47962264	+	24/25
	48146593	48146618	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48090930	48090955	-	25/25	uc004djd.1 SSX3 8
	48039953	48039978	-	25/25	uc010nib.1 SSX9 8
	52689962	52689986	-	24/25	uc004dqx.1 SSX7 8
	52742795	52742820	-	24/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
210394_x_at_3	52679636	52679661	+	25/25
	52649967	52649992	+	25/25
	48186212	48186237	+	25/25
	48137642	48137667	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011736	48011761	+	25/25	uc004djb.1 SSX1 8
	47962303	47962328	+	25/25
	47864926	47864951	+	25/25	uc004dix.1 SSX6 8
	52807255	52807280	+	24/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48146529	48146554	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48039889	48039914	-	25/25	uc010nib.1 SSX9 8
	47930660	47930685	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52742732	52742757	-	24/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48090867	48090892	-	24/25	uc004djd.1 SSX3 8
210394_x_at_4	48137672	48137697	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011766	48011791	+	23/25	uc004djb.1 SSX1 8
	48146499	48146524	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
210394_x_at_5	52679264	52679289	+	25/25
	47864558	47864583	+	25/25	uc004dix.1 SSX6 8
	48071989	48072014	+	25/25
	52649588	52649613	+	25/25
	47961941	47961966	+	25/25
	48137274	48137299	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52723747	52723772	+	25/25
	48011364	48011389	+	25/25	uc004djb.1 SSX1 8
	52806848	52806873	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48185843	48185868	+	24/25
	47910265	47910290	+	24/25
	52835598	52835623	+	23/25
	52826238	52826263	-	25/25
	52743135	52743160	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48146897	48146922	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091256	48091281	-	25/25	uc004djd.1 SSX3 8
	47931078	47931103	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
210394_x_at_6	48137298	48137323	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47864582	47864606	+	24/25	uc004dix.1 SSX6 8
	48185867	48185891	+	23/25
	48072013	48072037	+	23/25
	47961965	47961990	+	23/25
	47910289	47910312	+	22/25		This probe is not considered a match. Only 22/25 matches found
	48146873	48146898	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48040245	48040269	-	22/25	uc010nib.1 SSX9 8	This probe is not considered a match. Only 22/25 matches found
210394_x_at_7	48137315	48137340	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47961983	47962007	+	24/25
	48185884	48185909	+	24/25
	47864599	47864624	+	24/25	uc004dix.1 SSX6 8
	48146856	48146881	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
210394_x_at_8	48137396	48137421	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47864680	47864705	+	25/25	uc004dix.1 SSX6 8
	48185966	48185991	+	25/25
	52723869	52723894	+	24/25
	52649710	52649735	+	24/25
	52835720	52835745	+	24/25
	48011486	48011511	+	24/25	uc004djb.1 SSX1 8
	52679386	52679411	+	24/25
	48072111	48072136	+	24/25
	47962059	47962084	+	23/25
	48146775	48146800	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	52826116	52826141	-	24/25
	52690165	52690190	-	24/25	uc004dqx.1 SSX7 8
	48040146	48040171	-	24/25	uc010nib.1 SSX9 8
210394_x_at_9	48137411	48137436	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48185981	48186006	+	25/25
	47864695	47864720	+	25/25	uc004dix.1 SSX6 8
	48072126	48072151	+	24/25
	52723884	52723909	+	24/25
	52679401	52679426	+	24/25
	52806985	52807010	+	24/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48011501	48011526	+	24/25	uc004djb.1 SSX1 8
	52835735	52835760	+	24/25
	52649725	52649749	+	23/25
	47962074	47962099	+	23/25
	48146760	48146785	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48040131	48040156	-	25/25	uc010nib.1 SSX9 8
	47930941	47930966	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52826101	52826126	-	24/25
	52742998	52743023	-	24/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690150	52690175	-	24/25	uc004dqx.1 SSX7 8
	48091119	48091144	-	24/25	uc004djd.1 SSX3 8
210394_x_at_10	47864720	47864745	+	25/25	uc004dix.1 SSX6 8
	48186006	48186031	+	25/25
	48137436	48137461	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011526	48011551	+	25/25	uc004djb.1 SSX1 8
	47962099	47962124	+	25/25
	47910425	47910450	+	25/25
	48072151	48072176	+	24/25
	52723909	52723934	+	24/25
	52835648	52835785	+	25/25		This probe is not considered a match. Chr gap bases = 112
	48146735	48146760	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	52826076	52826101	-	24/25
	52690125	52690192	-	25/25	uc004dqx.1 SSX7 8	This probe is not considered a match. Chr gap bases = 42
	48040106	48040173	-	25/25	uc010nib.1 SSX9 8	This probe is not considered a match. Chr gap bases = 42
210394_x_at_11	52835801	52835826	+	25/25
	52807050	52807075	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864761	47864786	+	25/25	uc004dix.1 SSX6 8
	48186047	48186072	+	25/25
	48137477	48137502	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52679467	52679492	+	25/25
	52649791	52649816	+	25/25
	48011567	48011592	+	25/25	uc004djb.1 SSX1 8
	47962140	47962165	+	25/25
	47910466	47910491	+	25/25
	52723950	52723975	+	24/25
	48072192	48072217	+	24/25
	52742933	52742958	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690084	52690109	-	25/25	uc004dqx.1 SSX7 8
	48146694	48146719	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	52826035	52826060	-	24/25
	48091054	48091079	-	24/25	uc004djd.1 SSX3 8
	48040065	48040090	-	24/25	uc010nib.1 SSX9 8

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