Genomic Probe Mapping

Mapping of probe set 208586_s_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_005636
Chromosomal Location	chrXp11.23
UniGene ID	Hs.648298
Gene Symbol	SSX4, SSX4B
Ensembl	ENSG00000198946, ENSG00000204645
Entrez Gene	548313, 6759
SwissProt	A8MYD4, B2RPE3, O60224, Q3SYD4
RefSeq Transcript ID	NM_001034832, NM_001040612, NM_005636, NM_175729, XM_001725018

Annotation based on mapping results:

This probe is unique to SSX4.

Only 10/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 7 alternative probes: (1) 206626_x_at, (2) 207666_x_at, (3) 208586_s_at, (4) 210394_x_at, (5) 210497_x_at, (6) 211425_x_at, (7) 216471_x_at.

Affymetrix annotation for this probe: SSX4, SSX4B.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

208586_s_at_1

48129028

48129053

25/25

uc004djg.1	SSX4	3
uc004djf.1	SSX4	3

47902635

47902926

25/25

This probe is not considered a match. Chr gap bases = 266

48155144

48155169

25/25

uc004djh.1	SSX4	3
uc004dji.1	SSX4	3

208586_s_at_2

48129037

48129062

25/25

uc004djg.1	SSX4	3
uc004djf.1	SSX4	3

47902910

47902935

25/25

52671367

52671392

24/25

47854901

47854926

23/25

uc004dix.1

SSX6

48155135

48155160

25/25

uc004djh.1	SSX4	3
uc004dji.1	SSX4	3

52698643

52698668

23/25

uc004dqx.1

SSX7

52656913

52656938

23/25

48099009

48099034

23/25

uc004dje.1	SSX3	3
uc010nic.1	SSX3	3
uc004djd.1	SSX3	3

48048604

48048629

23/25

uc010nib.1

SSX9

48021339

48021364

23/25

47939118

47939143

23/25

uc004diz.1	SSX5	4
uc004dja.1	SSX5	3

208586_s_at_3

48129759

48129784

25/25

uc004djg.1	SSX4	4
uc004djf.1	SSX4	4

47903664

47903689

24/25

48154413

48154438

25/25

uc004djh.1	SSX4	4
uc004dji.1	SSX4	4

208586_s_at_4

48129768

48129793

25/25

uc004djg.1	SSX4	4
uc004djf.1	SSX4	4

47903673

47903697

23/25

48154404

48154429

25/25

uc004djh.1	SSX4	4
uc004dji.1	SSX4	4

208586_s_at_5

48129777

48129802

25/25

uc004djg.1	SSX4	4
uc004djf.1	SSX4	4

47903682

47903707

24/25

48154395

48154420

25/25

uc004djh.1	SSX4	4
uc004dji.1	SSX4	4

208586_s_at_6

48129791

48129816

25/25

uc004djg.1	SSX4	4
uc004djf.1	SSX4	4

48154381

48154406

25/25

uc004djh.1	SSX4	4
uc004dji.1	SSX4	4

208586_s_at_7

48129805

48129830

25/25

uc004djg.1	SSX4	4
uc004djf.1	SSX4	4

48154367

48154392

25/25

uc004djh.1	SSX4	4
uc004dji.1	SSX4	4

208586_s_at_8

48131711

48131736

25/25

uc004djg.1	SSX4	5
uc004djf.1	SSX4	5

52801616

52801641

23/25

uc004drb.1	SSX2	5
uc004dra.1	SSX2	5

52718507

52718532

23/25

48006159

48006184

23/25

uc004djb.1

SSX1

47957185

47957210

23/25

48152461

48152486

25/25

uc004djh.1	SSX4	5
uc004dji.1	SSX4	5

208586_s_at_9

48131715

48131740

25/25

uc004djg.1	SSX4	5
uc004djf.1	SSX4	5

48152457

48152482

25/25

uc004djh.1	SSX4	5
uc004dji.1	SSX4	5

52654420

52654445

23/25

208586_s_at_10

48128468

48128493

25/25

uc004djg.1	SSX4	2
uc004djf.1	SSX4	2

48155703

48155728

25/25

uc004djh.1	SSX4	2
uc004dji.1	SSX4	2

52657478

52657500

21/25

This probe is not considered a match. Only 21/25 matches found

208586_s_at_11

48155241

48155704

25/25

uc004djh.1	SSX4	3, 2
uc004dji.1	SSX4	3, 2

This probe is not considered a match. Chr gap bases = 438