Gene Enrichment Profiler

Mapping of probe set 206626_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	BC001003
  Chromosomal Location	chrXp11.23-p11.22
  UniGene ID	Hs.694472
  Gene Symbol	SSX1
  Ensembl	ENSG00000126752
  Entrez Gene	6756
  SwissProt	A3KN76, Q16384, Q7RTT4
  RefSeq Transcript ID	NM_005635

• Annotation based on mapping results:

  This probe is not unique and matches SSX1, SSX2, SSX3, SSX4, SSX5, SSX6, SSX7, SSX9.

  Only 8/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 13 alternative probes: (1) 206626_x_at, (2) 206627_s_at, (3) 207493_x_at, (4) 207666_x_at, (5) 208528_x_at, (6) 208586_s_at, (7) 210394_x_at, (8) 210497_x_at, (9) 211425_x_at, (10) 211670_x_at, (11) 211731_x_at, (12) 215881_x_at, (13) 216471_x_at.

  Affymetrix annotation for this probe: SSX1.

  Brainarray annotation for this probe: SSX1.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
206626_x_at_1	52835801	52835826	+	25/25
	52807050	52807075	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864761	47864786	+	25/25	uc004dix.1 SSX6 8
	48186047	48186072	+	25/25
	48137477	48137502	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52679467	52679492	+	25/25
	52649791	52649816	+	25/25
	48011567	48011592	+	25/25	uc004djb.1 SSX1 8
	47962140	47962165	+	25/25
	47910466	47910491	+	25/25
	52723950	52723975	+	24/25
	48072192	48072217	+	24/25
	52742933	52742958	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690084	52690109	-	25/25	uc004dqx.1 SSX7 8
	48146694	48146719	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	52826035	52826060	-	24/25
	48091054	48091079	-	24/25	uc004djd.1 SSX3 8
	48040065	48040090	-	24/25	uc010nib.1 SSX9 8
206626_x_at_2	52807102	52807127	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48011619	48011644	+	25/25	uc004djb.1 SSX1 8
	47864813	47864838	+	25/25	uc004dix.1 SSX6 8
	48186099	48186124	+	25/25
	48137529	48137554	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52724002	52724028	+	25/25
	48072244	48072266	+	22/25		This probe is not considered a match. Only 22/25 matches found
	47962192	47962214	+	22/25		This probe is not considered a match. Only 22/25 matches found
	52649843	52649876	+	25/25		This probe is not considered a match. Chr gap bases = 8
	52742881	52742906	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48146642	48146667	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091002	48091027	-	25/25	uc004djd.1 SSX3 8
	48040013	48040038	-	24/25	uc010nib.1 SSX9 8
	47930823	47930848	-	24/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52825988	52826008	-	20/25		This probe is not considered a match. Only 20/25 matches found
206626_x_at_3	48137578	48137603	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011673	48011698	+	25/25	uc004djb.1 SSX1 8
	47910571	47910596	+	25/25
	47864862	47864887	+	25/25	uc004dix.1 SSX6 8
	52835924	52835948	+	24/25
	52807192	52807217	+	24/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52679573	52679598	+	24/25
	48186148	48186173	+	24/25
	47962239	47962264	+	24/25
	48146593	48146618	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48090930	48090955	-	25/25	uc004djd.1 SSX3 8
	48039953	48039978	-	25/25	uc010nib.1 SSX9 8
	52689962	52689986	-	24/25	uc004dqx.1 SSX7 8
	52742795	52742820	-	24/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
206626_x_at_4	52807255	52807280	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52679636	52679661	+	24/25
	52649967	52649992	+	24/25
	48186212	48186237	+	24/25
	48137642	48137667	+	24/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011736	48011761	+	24/25	uc004djb.1 SSX1 8
	47962303	47962328	+	24/25
	47864926	47864951	+	24/25	uc004dix.1 SSX6 8
	52742732	52742757	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48090867	48090892	-	25/25	uc004djd.1 SSX3 8
	48146529	48146554	-	24/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48039889	48039914	-	24/25	uc010nib.1 SSX9 8
	47930660	47930685	-	24/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
206626_x_at_5	48011275	48011300	+	25/25	uc004djb.1 SSX1 8
	48185753	48185778	+	25/25
	48137184	48137209	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47910176	47910201	+	25/25
	52679175	52679200	+	25/25
	47961851	47961876	+	25/25
	52806758	52806783	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864468	47864493	+	24/25	uc004dix.1 SSX6 8
	48071899	48071924	+	24/25
	52835508	52835533	+	24/25
	52743225	52743250	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690377	52690402	-	25/25	uc004dqx.1 SSX7 8
	48146987	48147012	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091346	48091371	-	25/25	uc004djd.1 SSX3 8
	47931168	47931193	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	48040356	48040381	-	24/25	uc010nib.1 SSX9 8
206626_x_at_6	48011307	48011332	+	25/25	uc004djb.1 SSX1 8
	52835542	52835565	+	23/25
	52806792	52806815	+	23/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	52723691	52723714	+	23/25
	52679208	52679231	+	23/25
	52649532	52649555	+	23/25
	48185787	48185810	+	23/25
	48137218	48137241	+	23/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47961885	47961908	+	22/25		This probe is not considered a match. Only 22/25 matches found
	52826296	52826319	-	23/25
	52743193	52743216	-	23/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690345	52690368	-	23/25	uc004dqx.1 SSX7 8
	48146955	48146978	-	23/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091314	48091337	-	23/25	uc004djd.1 SSX3 8
	48040324	48040347	-	23/25	uc010nib.1 SSX9 8
	47931136	47931160	-	23/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
206626_x_at_7	52679264	52679289	+	25/25
	47864558	47864583	+	25/25	uc004dix.1 SSX6 8
	48071989	48072014	+	25/25
	52649588	52649613	+	25/25
	47961941	47961966	+	25/25
	48137274	48137299	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	52723747	52723772	+	25/25
	48011364	48011389	+	25/25	uc004djb.1 SSX1 8
	52806848	52806873	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48185843	48185868	+	24/25
	47910265	47910290	+	24/25
	52835598	52835623	+	23/25
	52826238	52826263	-	25/25
	52743135	52743160	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	48146897	48146922	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091256	48091281	-	25/25	uc004djd.1 SSX3 8
	47931078	47931103	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
206626_x_at_8	52835624	52835649	+	25/25
	52679290	52679315	+	25/25
	48011390	48011415	+	25/25	uc004djb.1 SSX1 8
	47910291	47910316	+	24/25
	48072015	48072040	+	23/25
	52690261	52690286	-	25/25	uc004dqx.1 SSX7 8
	48040242	48040267	-	24/25	uc010nib.1 SSX9 8
	47931057	47931077	-	20/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8	This probe is not considered a match. Only 20/25 matches found
206626_x_at_9	52679397	52679422	+	25/25
	48011497	48011522	+	25/25	uc004djb.1 SSX1 8
	52835731	52835756	+	24/25
	48185977	48186002	+	24/25
	48137407	48137432	+	24/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47864691	47864716	+	24/25	uc004dix.1 SSX6 8
	47962070	47962095	+	23/25
	52690154	52690179	-	24/25	uc004dqx.1 SSX7 8
	48146764	48146789	-	24/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48040135	48040160	-	24/25	uc010nib.1 SSX9 8
	47930945	47930970	-	24/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
206626_x_at_10	47864720	47864745	+	25/25	uc004dix.1 SSX6 8
	48186006	48186031	+	25/25
	48137436	48137461	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48011526	48011551	+	25/25	uc004djb.1 SSX1 8
	47962099	47962124	+	25/25
	47910425	47910450	+	25/25
	48072151	48072176	+	24/25
	52723909	52723934	+	24/25
	52835648	52835785	+	25/25		This probe is not considered a match. Chr gap bases = 112
	48146735	48146760	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	52826076	52826101	-	24/25
	52690125	52690192	-	25/25	uc004dqx.1 SSX7 8	This probe is not considered a match. Chr gap bases = 42
	48040106	48040173	-	25/25	uc010nib.1 SSX9 8	This probe is not considered a match. Chr gap bases = 42
206626_x_at_11	52679447	52679472	+	25/25
	48011547	48011572	+	25/25	uc004djb.1 SSX1 8
	52835781	52835806	+	23/25
	52723930	52723955	+	23/25
	48186027	48186052	+	23/25
	48137457	48137482	+	23/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	48072172	48072197	+	23/25
	47962120	47962145	+	23/25
	47864741	47864766	+	23/25	uc004dix.1 SSX6 8
	52826055	52826080	-	23/25
	52690104	52690129	-	23/25	uc004dqx.1 SSX7 8
	48146714	48146739	-	23/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7

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