Gene Enrichment Profiler

Mapping of probe set 211731_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	BC005904
  Chromosomal Location	chrXp11.23
  UniGene ID	Hs.558445
  Gene Symbol	SSX3
  Ensembl	ENSG00000165584
  Entrez Gene	10214
  SwissProt	Q5JQZ4, Q99909, Q9BRW7
  RefSeq Transcript ID	NM_021014, NM_175711

• Annotation based on mapping results:

  This probe is unique to SSX3.

  Only 8/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 9 alternative probes: (1) 206626_x_at, (2) 207493_x_at, (3) 207666_x_at, (4) 210394_x_at, (5) 210497_x_at, (6) 211670_x_at, (7) 211731_x_at, (8) 215881_x_at, (9) 216471_x_at.

  Affymetrix annotation for this probe: SSX3.

  Brainarray annotation for this probe: SSX3.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
211731_x_at_1	48098436	48098461	-	25/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938567	47938591	-	23/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
211731_x_at_2	48098414	48098439	-	25/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938545	47938570	-	24/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
211731_x_at_3
211731_x_at_4	48131699	48131724	+	25/25	uc004djg.1 SSX4 5 uc004djf.1 SSX4 5
	52801604	52801629	+	25/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	47957173	47957198	+	24/25
	47857522	47857547	+	24/25	uc004dix.1 SSX6 5
	52718495	52718520	+	24/25
	52674025	52674050	+	24/25
	47905310	47905335	+	24/25
	48006147	48006172	+	24/25	uc004djb.1 SSX1 5
	52649033	52649411	+	25/25		This probe is not considered a match. Chr gap bases = 353
	52748377	52748402	-	25/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
	48152473	48152498	-	25/25	uc004djh.1 SSX4 5 uc004dji.1 SSX4 5
	48096500	48096525	-	25/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	52831527	52831552	-	24/25
	48046113	48046138	-	24/25	uc010nib.1 SSX9 5
	47936633	47936658	-	24/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5
	52654436	52654461	-	23/25
211731_x_at_5	52801620	52801645	+	24/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	47905326	47905351	+	24/25
	47957189	47957214	+	23/25
	48096484	48096509	-	25/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	48046097	48046122	-	25/25	uc010nib.1 SSX9 5
	47936617	47936642	-	25/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5
	52748361	52748386	-	24/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
211731_x_at_6
211731_x_at_7	48093955	48094379	-	25/25	uc004dje.1 SSX3 7, 6 uc004djd.1 SSX3 6	This probe is not considered a match. Chr gap bases = 399
211731_x_at_8	52804196	52804221	+	23/25	uc004drb.1 SSX2 in intron uc004dra.1 SSX2 in intron
	48093944	48093969	-	24/25	uc004dje.1 SSX3 7
	52745787	52745812	-	23/25	uc004dqz.1 SSX2 in intron uc004dqy.1 SSX2 in intron
211731_x_at_9	141533569	141533594	+	24/25
	52804210	52804235	+	24/25	uc004drb.1 SSX2 in intron uc004dra.1 SSX2 in intron
	52720751	52720776	+	24/25
	48134278	48134303	+	24/25	uc004djg.1 SSX4 in intron uc004djf.1 SSX4 in intron
	47861890	47861915	+	24/25	uc004dix.1 SSX6 in intron
	47907292	47907316	+	23/25
	33248396	33248420	+	23/25	uc004ddb.1 DMD in intron uc004ddf.2 DMD in intron
	48093930	48093955	-	25/25	uc004dje.1 SSX3 7
	52829275	52829300	-	24/25
	52745773	52745798	-	24/25	uc004dqz.1 SSX2 in intron uc004dqy.1 SSX2 in intron
	52651880	52651905	-	24/25
	48149893	48149918	-	24/25	uc004djh.1 SSX4 in intron uc004dji.1 SSX4 in intron
	52693602	52693627	-	23/25	uc004dqx.1 SSX7 in intron
211731_x_at_10	52805328	52805353	+	25/25	uc004dra.1 SSX2 7
	52744655	52744680	-	25/25	uc004dqy.1 SSX2 7
	48092776	48092801	-	25/25	uc004dje.1 SSX3 8
	48042421	48042446	-	24/25	uc010nib.1 SSX9 in intron
211731_x_at_11	52805401	52805426	+	24/25	uc004dra.1 SSX2 7
	48184096	48184121	+	24/25
	48135509	48135534	+	24/25	uc004djg.1 SSX4 in intron uc004djf.1 SSX4 in intron
	48092703	48092728	-	25/25	uc004dje.1 SSX3 8
	52692374	52692398	-	24/25	uc004dqx.1 SSX7 in intron
	52744582	52744607	-	24/25	uc004dqy.1 SSX2 7
	48148662	48148687	-	24/25	uc004djh.1 SSX4 in intron uc004dji.1 SSX4 in intron
	48042349	48042373	-	23/25	uc010nib.1 SSX9 in intron
	22501895	22501919	-	23/25
	56142432	56142456	-	22/25		This probe is not considered a match. Only 22/25 matches found

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