Gene Enrichment Profiler

Mapping of probe set 207493_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	NM_003147
  Chromosomal Location	chrXp11.22
  UniGene ID	Hs.289105
  Gene Symbol	LOC100130648, SSX2, SSX2B
  Ensembl	ENSG00000157950, ENSG00000187754
  Entrez Gene	100130648, 6757, 727837
  SwissProt	Q16385, Q8WWZ9, Q9NZK4
  RefSeq Transcript ID	NM_003147, NM_175698, XM_001719568, XM_001720499

• Annotation based on mapping results:

  This probe is not unique and matches SSX5, SSX9, SSX2, SSX3.

  Only 7/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 11 alternative probes: (1) 206626_x_at, (2) 207493_x_at, (3) 207666_x_at, (4) 208528_x_at, (5) 210394_x_at, (6) 210497_x_at, (7) 211425_x_at, (8) 211670_x_at, (9) 211731_x_at, (10) 215881_x_at, (11) 216471_x_at.

  Affymetrix annotation for this probe: SSX2B, SSX2, LOC100130648.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chrX

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
207493_x_at_1	52799651	52799676	+	25/25	uc004drb.1 SSX2 4 uc004dra.1 SSX2 4
	52672078	52672103	+	25/25
	48002926	48002951	+	25/25	uc004djb.1 SSX1 4
	52750330	52750355	-	25/25	uc004dqz.1 SSX2 4 uc004dqy.1 SSX2 4
	48021145	48021170	-	25/25
	48048042	48048066	-	24/25	uc010nib.1 SSX9 4
	47938567	47938592	-	24/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
207493_x_at_2	52799711	52799735	+	24/25	uc004drb.1 SSX2 4 uc004dra.1 SSX2 4
	52750271	52750295	-	24/25	uc004dqz.1 SSX2 4 uc004dqy.1 SSX2 4
	48098377	48098401	-	24/25	uc004dje.1 SSX3 4 uc010nic.1 SSX3 4 uc004djd.1 SSX3 4
	47938508	47938532	-	24/25	uc004diz.1 SSX5 5 uc004dja.1 SSX5 4
207493_x_at_3	52801603	52801628	+	25/25	uc004drb.1 SSX2 5 uc004dra.1 SSX2 5
	48131698	48131723	+	25/25	uc004djg.1 SSX4 5 uc004djf.1 SSX4 5
	47905309	47905334	+	24/25
	47857521	47857546	+	24/25	uc004dix.1 SSX6 5
	52718494	52718519	+	24/25
	52674024	52674049	+	24/25
	52649032	52649057	+	24/25
	47957172	47957197	+	24/25
	48006146	48006171	+	24/25	uc004djb.1 SSX1 5
	48066730	48066755	+	23/25
	52748378	52748403	-	25/25	uc004dqz.1 SSX2 5 uc004dqy.1 SSX2 5
	48152474	48152499	-	25/25	uc004djh.1 SSX4 5 uc004dji.1 SSX4 5
	48096501	48096525	-	24/25	uc004dje.1 SSX3 5 uc010nic.1 SSX3 5 uc004djd.1 SSX3 5
	52831528	52831553	-	24/25
	48046114	48046139	-	24/25	uc010nib.1 SSX9 5
	47936634	47936659	-	24/25	uc004diz.1 SSX5 6 uc004dja.1 SSX5 5
	52696155	52696175	-	20/25	uc004dqx.1 SSX7 5	This probe is not considered a match. Only 20/25 matches found
207493_x_at_4	48008044	48008176	+	25/25	uc004djb.1 SSX1 6	This probe is not considered a match. Chr gap bases = 107
207493_x_at_5	52803726	52803751	+	25/25	uc004drb.1 SSX2 6 uc004dra.1 SSX2 6
	48133802	48133827	+	24/25	uc004djf.1 SSX4 6
	47958955	47958979	+	23/25
	48176532	48176556	+	22/25		This probe is not considered a match. Only 22/25 matches found
	52746257	52746282	-	25/25	uc004dqz.1 SSX2 6 uc004dqy.1 SSX2 6
	48150369	48150394	-	24/25	uc004djh.1 SSX4 6
	48094405	48094429	-	23/25	uc004dje.1 SSX3 6 uc004djd.1 SSX3 6
	48044050	48044074	-	23/25	uc010nib.1 SSX9 6
207493_x_at_6	52803751	52803776	+	25/25	uc004drb.1 SSX2 6 uc004dra.1 SSX2 6
	52746232	52746257	-	25/25	uc004dqz.1 SSX2 6 uc004dqy.1 SSX2 6
	48094380	48094405	-	25/25	uc004dje.1 SSX3 6 uc004djd.1 SSX3 6
	48044025	48044050	-	25/25	uc010nib.1 SSX9 6
	52694050	52694075	-	24/25	uc004dqx.1 SSX7 6
207493_x_at_7
207493_x_at_8	52806167	52806192	+	25/25	uc004drb.1 SSX2 7 uc004dra.1 SSX2 8
	52722747	52722772	+	25/25
	52678587	52678612	+	25/25
	48184863	48184888	+	25/25
	48136276	48136301	+	25/25	uc004djg.1 SSX4 6 uc004djf.1 SSX4 7
	48010687	48010712	+	25/25	uc004djb.1 SSX1 7
	47863881	47863906	+	25/25	uc004dix.1 SSX6 7
	48070979	48071004	+	24/25
	47961259	47961284	+	24/25
	52827279	52827304	-	25/25
	52743816	52743841	-	25/25	uc004dqz.1 SSX2 7 uc004dqy.1 SSX2 8
	52691271	52691296	-	25/25	uc004dqx.1 SSX7 7
	48147895	48147920	-	25/25	uc004djh.1 SSX4 7 uc004dji.1 SSX4 6
	48091936	48091961	-	25/25	uc004djd.1 SSX3 7
	48041252	48041277	-	25/25	uc010nib.1 SSX9 7
	47932064	47932089	-	24/25	uc004diz.1 SSX5 8 uc004dja.1 SSX5 7
207493_x_at_9	52806240	52806730	+	25/25	uc004drb.1 SSX2 7, 8 uc004dra.1 SSX2 8, 9	This probe is not considered a match. Chr gap bases = 465
	52743278	52743768	-	25/25	uc004dqz.1 SSX2 7, 8 uc004dqy.1 SSX2 8, 9	This probe is not considered a match. Chr gap bases = 465
207493_x_at_10	48011262	48011287	+	25/25	uc004djb.1 SSX1 8
	48137171	48137196	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47864455	47864480	+	25/25	uc004dix.1 SSX6 8
	52806745	52806770	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	48185740	48185765	+	25/25
	52723644	52723668	+	24/25
	47961838	47961863	+	24/25
	47910163	47910188	+	24/25
	52679162	52679187	+	24/25
	52835495	52835520	+	24/25
	48071886	48071911	+	24/25
	52743238	52743263	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690390	52690415	-	25/25	uc004dqx.1 SSX7 8
	48147000	48147025	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091359	48091384	-	25/25	uc004djd.1 SSX3 8
	47931181	47931206	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	52826342	52826366	-	24/25
	48040369	48040394	-	24/25	uc010nib.1 SSX9 8
207493_x_at_11	48011277	48011302	+	25/25	uc004djb.1 SSX1 8
	48185755	48185780	+	25/25
	48137186	48137211	+	25/25	uc004djg.1 SSX4 7 uc004djf.1 SSX4 8
	47910178	47910203	+	25/25
	52679177	52679202	+	25/25
	47961853	47961878	+	25/25
	52806760	52806785	+	25/25	uc004drb.1 SSX2 8 uc004dra.1 SSX2 9
	47864470	47864495	+	24/25	uc004dix.1 SSX6 8
	48071901	48071926	+	24/25
	52835510	52835535	+	24/25
	52743223	52743248	-	25/25	uc004dqz.1 SSX2 8 uc004dqy.1 SSX2 9
	52690375	52690400	-	25/25	uc004dqx.1 SSX7 8
	48146985	48147010	-	25/25	uc004djh.1 SSX4 8 uc004dji.1 SSX4 7
	48091344	48091369	-	25/25	uc004djd.1 SSX3 8
	47931166	47931191	-	25/25	uc004diz.1 SSX5 9 uc004dja.1 SSX5 8
	48040354	48040379	-	24/25	uc010nib.1 SSX9 8

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