Genomic Probe Mapping

Mapping of probe set 208341_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_022646
Chromosomal Location	chr17q24.2
UniGene ID	Hs.654390
Gene Symbol	CSH1, CSH2, GH1
Ensembl	ENSG00000213218
Entrez Gene	1442, 1443, 2688
SwissProt	A6NIT4, A8K6C2, B1A4H9, P01241, P01243, P78451, Q0VDB1, Q6IYF0, Q6IYF1, Q6PF11, Q7KZ35
RefSeq Transcript ID	NM_000515, NM_001317, NM_020991, NM_022559, NM_022560, NM_022561, NM_022562, NM_022640, NM_022641, NM_022644, NM_022645

Annotation based on mapping results:

This probe is not unique and matches GH1, GH2, CSH1, CSH2, CSHL1.

Only 10/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 22 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211508_s_at, (22) 211739_x_at.

Affymetrix annotation for this probe: CSH2, GH1, CSH1.

Brainarray annotation for this probe: CSH2, CSH1.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

208341_x_at_1

59327598

59327623

25/25

uc002jct.1	CSH1	1
uc002jcy.1	CSH1	1
uc002jck.1	CSH2	1
uc002jcu.1	CSH1	1
uc002jcs.1	CSH1	1
uc002jcv.1	CSH1	1
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	1

59342283

59342308

24/25

uc002jdf.1	CSHL1	1
uc002jdh.1	CSHL1	1
uc002jcz.1	CSHL1	1
uc002jdc.1	CSHL1	1
uc002jdg.1	CSHL1	1
uc002jdb.1	CSHL1	1
uc002jdd.1	CSHL1	1
uc002jda.1	CSHL1	1
uc002jde.1	CSHL1	1

59312888

59312913

24/25

uc002jcl.1	GH2	1
uc002jcn.1	GH2	1
uc002jcm.1	GH2	1
uc002jcj.1	GH2	1
uc002jco.1	GH2	1

59304701

59304726

24/25

uc002jci.1	CSH2	1
uc002jch.1	CSH2	1
uc002jcg.1	CSH2	1

59349863

59349888

23/25

uc002jdi.1	GH1	1
uc002jdm.1	GH1	1
uc002jdn.2	GH1	1
uc002jdk.1	GH1	1
uc002jdj.1	GH1	1
uc002jdl.1	GH1	1

208341_x_at_2

59326257

59326282

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303361

59303386

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348544

59348569

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340946

59340971

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

208341_x_at_3

59303334

59303359

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340919

59340944

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326230

59326255

24/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

208341_x_at_4

59340903

59340928

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326214

59326239

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303318

59303343

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59311513

59311538

24/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

208341_x_at_5

59326198

59326223

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311497

59311522

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303302

59303327

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348485

59348510

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340887

59340912

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

208341_x_at_6

59348469

59348494

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59326182

59326207

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311481

59311506

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303286

59303311

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340871

59340896

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

208341_x_at_7

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

208341_x_at_8

59303229

59303254

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348412

59348437

23/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340814

59340839

23/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326125

59326150

23/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311424

59311449

23/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

208341_x_at_9

59303212

59303237

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59326108

59326561

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4, 3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

This probe is not considered a match. Chr gap bases = 428

208341_x_at_10

59327656

59327681

25/25

uc002jct.1	CSH1	1
uc002jcy.1	CSH1	1
uc002jck.1	CSH2	1
uc002jcu.1	CSH1	1
uc002jcs.1	CSH1	1
uc002jcv.1	CSH1	1
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	1

59304759

59304784

25/25

uc002jci.1	CSH2	1
uc002jch.1	CSH2	1
uc002jcg.1	CSH2	1

208341_x_at_11

59349882

59349907

25/25

uc002jdi.1	GH1	1
uc002jdm.1	GH1	1
uc002jdn.2	GH1	1
uc002jdk.1	GH1	1
uc002jdj.1	GH1	1
uc002jdl.1	GH1	1

59327617

59327642

25/25

uc002jct.1	CSH1	1
uc002jcy.1	CSH1	1
uc002jck.1	CSH2	1
uc002jcu.1	CSH1	1
uc002jcs.1	CSH1	1
uc002jcv.1	CSH1	1
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	1

59312907

59312932

25/25

uc002jcl.1	GH2	1
uc002jcn.1	GH2	1
uc002jcm.1	GH2	1
uc002jcj.1	GH2	1
uc002jco.1	GH2	1

59304720

59304745

25/25

uc002jci.1	CSH2	1
uc002jch.1	CSH2	1
uc002jcg.1	CSH2	1

59342302

59342327

24/25

uc002jdf.1	CSHL1	1
uc002jdh.1	CSHL1	1
uc002jcz.1	CSHL1	1
uc002jdc.1	CSHL1	1
uc002jdg.1	CSHL1	1
uc002jdb.1	CSHL1	1
uc002jdd.1	CSHL1	1
uc002jda.1	CSHL1	1
uc002jde.1	CSHL1	1