Genomic Probe Mapping

Mapping of probe set 207285_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_001318
Chromosomal Location	chr17q24.2
UniGene ID	Hs.655225
Gene Symbol	CSHL1
Ensembl	ENSG00000204414
Entrez Gene	1444
SwissProt	A6NKA8, A8MTU3, Q0VDB2, Q14406
RefSeq Transcript ID	NM_001318, NM_022579, NM_022580, NM_022581

Annotation based on mapping results:

This probe is not unique and matches CSH1, CSH2, CSHL1.

Only 10/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 21 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211739_x_at.

Affymetrix annotation for this probe: CSHL1.

Brainarray annotation for this probe: CSHL1.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

207285_x_at_1

59341579

59341604

25/25

uc002jda.1	CSHL1	3
uc002jde.1	CSHL1	1
uc002jdh.1	CSHL1	2
uc002jdg.1	CSHL1	2
uc002jdb.1	CSHL1	2

59326890

59326915

25/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59303994

59304019

25/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

207285_x_at_2

59341546

59341571

25/25

uc002jdf.1	CSHL1	2
uc002jdh.1	CSHL1	2
uc002jcz.1	CSHL1	3
uc002jdc.1	CSHL1	2
uc002jdg.1	CSHL1	2
uc002jdb.1	CSHL1	2
uc002jdd.1	CSHL1	3
uc002jda.1	CSHL1	3
uc002jde.1	CSHL1	1

59326857

59326882

25/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59303961

59303986

25/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

59312155

59312179

22/25

uc002jcl.1	GH2	3
uc002jcn.1	GH2	3
uc002jcm.1	GH2	3
uc002jcj.1	GH2	3
uc002jco.1	GH2	3

This probe is not considered a match. Only 22/25 matches found

207285_x_at_3

59341400

59341518

25/25

uc002jdf.1	CSHL1	2, 3
uc002jdh.1	CSHL1	2, 3
uc002jcz.1	CSHL1	4, 3
uc002jdc.1	CSHL1	3, 2
uc002jdg.1	CSHL1	3, 2
uc002jdb.1	CSHL1	3, 2
uc002jdd.1	CSHL1	4, 3
uc002jda.1	CSHL1	4, 3
uc002jde.1	CSHL1	2, 1

This probe is not considered a match. Chr gap bases = 93

207285_x_at_4

59341333

59341358

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

207285_x_at_5

59341297

59341322

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

59326608

59326633

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303712

59303737

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

207285_x_at_6

59341282

59341307

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

59326593

59326618

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303697

59303722

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

207285_x_at_7

59340954

59340979

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326265

59326290

23/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303369

59303394

23/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

207285_x_at_8

59340935

59340960

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326246

59326271

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303350

59303375

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348533

59348558

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

207285_x_at_9

59340919

59340944

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326230

59326255

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303334

59303359

24/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

207285_x_at_10

59340894

59340919

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326205

59326230

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311504

59311529

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303309

59303334

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348492

59348517

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

207285_x_at_11

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3