Genomic Probe Mapping

Mapping of probe set 206195_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_022557
Chromosomal Location	chr17q24.2
UniGene ID	Hs.406754
Gene Symbol	GH2
Ensembl	ENSG00000136487
Entrez Gene	2689
SwissProt	B1A4H7, O14643, O14644, P01242, Q6FH32, Q6FH54
RefSeq Transcript ID	NM_002059, NM_022556, NM_022557, NM_022558

Annotation based on mapping results:

This probe is not unique and matches GH2, CSH1, CSH2, CSHL1.

Only 6/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 22 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211508_s_at, (22) 211739_x_at.

Affymetrix annotation for this probe: GH2.

Brainarray annotation for this probe: GH2.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

206195_x_at_1

59311840

59311865

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	4
uc002jco.1	GH2	4

59341230

59341255

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

206195_x_at_2

59311803

59311828

25/25

uc002jcl.1

GH2

206195_x_at_3

59311784

59311809

25/25

uc002jcl.1

GH2

59341174

59341198

24/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

59303589

59303613

24/25

uc002jci.1

CSH2

59326485

59326509

23/25

uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcr.1	CSH1	2

59348772

59348856

25/25

uc002jdi.1	GH1	4
uc002jdk.1	GH1	3
uc002jdj.1	GH1	4

This probe is not considered a match. Chr gap bases = 59

206195_x_at_4

59311766

59311791

25/25

uc002jcl.1

GH2

59348754

59348779

24/25

uc002jdi.1	GH1	in intron
uc002jdm.1	GH1	in intron
uc002jdn.2	GH1	in intron
uc002jdk.1	GH1	in intron
uc002jdj.1	GH1	in intron
uc002jdl.1	GH1	in intron

59341156

59341181

24/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

59326467

59326492

24/25

uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcr.1	CSH1	2

59303571

59303596

24/25

uc002jci.1

CSH2

206195_x_at_5

59311732

59311757

25/25

uc002jcl.1

GH2

59348720

59348745

24/25

uc002jdi.1	GH1	in intron
uc002jdm.1	GH1	in intron
uc002jdn.2	GH1	in intron
uc002jdk.1	GH1	in intron
uc002jdj.1	GH1	in intron
uc002jdl.1	GH1	in intron

59341122

59341147

24/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

206195_x_at_6

59311690

59311715

25/25

uc002jcl.1

GH2

206195_x_at_7

59348594

59348619

25/25

uc002jdi.1	GH1	5
uc002jdl.1	GH1	3
uc002jdk.1	GH1	4
uc002jdm.1	GH1	2
uc002jdj.1	GH1	5

59326307

59326332

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311606

59311631

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303411

59303436

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340996

59341021

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

206195_x_at_8

59311556

59311581

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

206195_x_at_9

59340894

59340919

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326205

59326230

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311504

59311529

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303309

59303334

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348492

59348517

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

206195_x_at_10

59348469

59348494

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59326182

59326207

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311481

59311506

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303286

59303311

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340871

59340896

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

206195_x_at_11

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3