Gene Enrichment Profiler

Mapping of probe set 208068_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	NM_022562
  Chromosomal Location	chr17q24.2
  UniGene ID	Hs.655225
  Gene Symbol	CSH1, CSH2, CSHL1, GH1, GH2
  Ensembl	ENSG00000136487, ENSG00000136488, ENSG00000189162, ENSG00000204414, ENSG00000213218
  Entrez Gene	1442, 1443, 1444, 2688, 2689
  SwissProt	A6NEF6, A6NFB4, A6NIT4, A6NKA8, A6NP12, A8K6C2, A8MTU3, B1A4G6, B1A4G7, B1A4H0, B1A4H2, B1A4H5, B1A4H7, B1A4H9, O14643, O14644, P01241, P01242, P01243, P78451, Q0VDB1, Q0VDB2, Q14406, Q6FH32, Q6FH54, Q6IYF0, Q6IYF1, Q6PF11, Q7KZ35
  RefSeq Transcript ID	NM_000515, NM_001317, NM_001318, NM_002059, NM_020991, NM_022556, NM_022557, NM_022558, NM_022559, NM_022560, NM_022561, NM_022562, NM_022579, NM_022580, NM_022581, NM_022640, NM_022641, NM_022644, NM_022645

• Annotation based on mapping results:

  This probe is not unique and matches GH1, GH2, CSH1, CSH2, CSHL1.

  Only 9/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 22 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211508_s_at, (22) 211739_x_at.

  Affymetrix annotation for this probe: CSH2, CSHL1, GH1, GH2, CSH1.

  Brainarray annotation for this probe: GH1.

---

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
208068_x_at_1	59348546	59348571	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59326259	59326284	-	24/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcy.1 CSH1 3 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59303363	59303388	-	24/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
	59340948	59340973	-	23/25	uc002jdf.1 CSHL1 3 uc002jdh.1 CSHL1 3 uc002jcz.1 CSHL1 5 uc002jdc.1 CSHL1 4 uc002jdg.1 CSHL1 3 uc002jdb.1 CSHL1 4 uc002jdd.1 CSHL1 5 uc002jda.1 CSHL1 5 uc002jde.1 CSHL1 2
208068_x_at_2	59348532	59348557	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59340934	59340959	-	24/25	uc002jdf.1 CSHL1 3 uc002jdh.1 CSHL1 3 uc002jcz.1 CSHL1 5 uc002jdc.1 CSHL1 4 uc002jdg.1 CSHL1 3 uc002jdb.1 CSHL1 4 uc002jdd.1 CSHL1 5 uc002jda.1 CSHL1 5 uc002jde.1 CSHL1 2
	59326245	59326270	-	24/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcy.1 CSH1 3 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59303349	59303374	-	24/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
208068_x_at_3	59348507	59348532	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
208068_x_at_4	59348492	59348517	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59340894	59340919	-	24/25	uc002jdf.1 CSHL1 3 uc002jdh.1 CSHL1 3 uc002jcz.1 CSHL1 5 uc002jdc.1 CSHL1 4 uc002jdg.1 CSHL1 3 uc002jdb.1 CSHL1 4 uc002jdd.1 CSHL1 5 uc002jda.1 CSHL1 5 uc002jde.1 CSHL1 2
	59326205	59326230	-	24/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcy.1 CSH1 3 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59311504	59311529	-	24/25	uc002jcl.1 GH2 4 uc002jcn.1 GH2 5 uc002jcm.1 GH2 5 uc002jco.1 GH2 5
	59303309	59303334	-	24/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
208068_x_at_5	59348469	59348494	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59326182	59326207	-	25/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcy.1 CSH1 3 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59311481	59311506	-	25/25	uc002jcl.1 GH2 4 uc002jcn.1 GH2 5 uc002jcm.1 GH2 5 uc002jco.1 GH2 5
	59303286	59303311	-	25/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
	59340871	59340896	-	24/25	uc002jdf.1 CSHL1 3 uc002jdh.1 CSHL1 3 uc002jcz.1 CSHL1 5 uc002jdc.1 CSHL1 4 uc002jdg.1 CSHL1 3 uc002jdb.1 CSHL1 4 uc002jdd.1 CSHL1 5 uc002jda.1 CSHL1 5 uc002jde.1 CSHL1 2
208068_x_at_6	59348441	59348466	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59340843	59340868	-	25/25	uc002jdf.1 CSHL1 3 uc002jdh.1 CSHL1 3 uc002jcz.1 CSHL1 5 uc002jdc.1 CSHL1 4 uc002jdg.1 CSHL1 3 uc002jdb.1 CSHL1 4 uc002jdd.1 CSHL1 5 uc002jda.1 CSHL1 5 uc002jde.1 CSHL1 2
	59326154	59326179	-	25/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcy.1 CSH1 3 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59311453	59311478	-	25/25	uc002jcl.1 GH2 4 uc002jcn.1 GH2 5 uc002jcm.1 GH2 5 uc002jco.1 GH2 5
	59303258	59303283	-	25/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
208068_x_at_7	59348393	59348418	-	25/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59311405	59311430	-	25/25	uc002jcl.1 GH2 4 uc002jcn.1 GH2 5 uc002jcm.1 GH2 5 uc002jco.1 GH2 5
	59326106	59326131	-	24/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59303210	59303235	-	23/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
208068_x_at_8	59348330	59348355	-	24/25	uc002jdi.1 GH1 5 uc002jdm.1 GH1 2 uc002jdn.2 GH1 5 uc002jdk.1 GH1 4 uc002jdj.1 GH1 5 uc002jdl.1 GH1 3
	59303144	59303169	-	23/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3
208068_x_at_9	59349884	59349908	-	24/25	uc002jdi.1 GH1 1 uc002jdm.1 GH1 1 uc002jdn.2 GH1 1 uc002jdk.1 GH1 1 uc002jdj.1 GH1 1 uc002jdl.1 GH1 1
	59327619	59327643	-	24/25	uc002jct.1 CSH1 1 uc002jcy.1 CSH1 1 uc002jck.1 CSH2 1 uc002jcu.1 CSH1 1 uc002jcs.1 CSH1 1 uc002jcv.1 CSH1 1 uc002jcr.1 CSH1 1 uc002jcw.1 CSH1 1
	59312909	59312933	-	24/25	uc002jcl.1 GH2 1 uc002jcn.1 GH2 1 uc002jcm.1 GH2 1 uc002jcj.1 GH2 1 uc002jco.1 GH2 1
	59304722	59304746	-	24/25	uc002jci.1 CSH2 1 uc002jch.1 CSH2 1 uc002jcg.1 CSH2 1
	59342304	59342328	-	23/25	uc002jdf.1 CSHL1 1 uc002jdh.1 CSHL1 1 uc002jcz.1 CSHL1 1 uc002jdc.1 CSHL1 1 uc002jdg.1 CSHL1 1 uc002jdb.1 CSHL1 1 uc002jdd.1 CSHL1 1 uc002jda.1 CSHL1 1 uc002jde.1 CSHL1 1
208068_x_at_10	59349859	59349883	-	24/25	uc002jdi.1 GH1 1 uc002jdm.1 GH1 1 uc002jdn.2 GH1 1 uc002jdk.1 GH1 1 uc002jdj.1 GH1 1 uc002jdl.1 GH1 1
208068_x_at_11	59348575	59348600	-	25/25	uc002jdi.1 GH1 5 uc002jdl.1 GH1 3 uc002jdk.1 GH1 4 uc002jdm.1 GH1 2 uc002jdj.1 GH1 5
	59311587	59311612	-	25/25	uc002jcl.1 GH2 4 uc002jcn.1 GH2 5 uc002jcm.1 GH2 5 uc002jco.1 GH2 5
	59326288	59326313	-	23/25	uc002jcq.1 CSH1 4 uc002jct.1 CSH1 5 uc002jcy.1 CSH1 3 uc002jcp.1 CSH1 4 uc002jcu.1 CSH1 4 uc002jcs.1 CSH1 5 uc002jcv.1 CSH1 3 uc002jcr.1 CSH1 2 uc002jcw.1 CSH1 5
	59303392	59303417	-	23/25	uc002jci.1 CSH2 4 uc002jck.1 CSH2 5 uc002jch.1 CSH2 5 uc002jcj.1 GH2 5 uc002jcg.1 CSH2 3

---