Genomic Probe Mapping

Mapping of probe set 205840_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_000515
Chromosomal Location	chr17q24.2
UniGene ID	Hs.654390
Gene Symbol	CSH1, CSH2, GH1
Ensembl	ENSG00000189162
Entrez Gene	1442, 1443, 2688
SwissProt	A6NEF6, A6NP12, A8K6C2, B1A4G6, B1A4G7, P01241, P01243, P78451, Q0VDB1, Q6IYF0, Q6IYF1, Q6PF11, Q7KZ35
RefSeq Transcript ID	NM_000515, NM_001317, NM_020991, NM_022559, NM_022560, NM_022561, NM_022562, NM_022640, NM_022641, NM_022644, NM_022645

Annotation based on mapping results:

This probe is not unique and matches GH1, GH2, CSH1, CSH2.

Only 9/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 22 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211508_s_at, (22) 211739_x_at.

Affymetrix annotation for this probe: CSH2, GH1, CSH1.

Brainarray annotation for this probe: GH1.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

205840_x_at_1

59349177

59349202

25/25

uc002jdi.1	GH1	3
uc002jdn.2	GH1	3
uc002jdj.1	GH1	3

59312189

59312214

25/25

uc002jcl.1	GH2	3
uc002jcn.1	GH2	3
uc002jcm.1	GH2	3
uc002jcj.1	GH2	3
uc002jco.1	GH2	3

59326526

59326916

25/25

uc002jcq.1	CSH1	3, 2
uc002jct.1	CSH1	4, 3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3, 2
uc002jcu.1	CSH1	4, 3
uc002jcs.1	CSH1	4, 3
uc002jcr.1	CSH1	2, 1
uc002jcw.1	CSH1	4, 3

This probe is not considered a match. Chr gap bases = 365

59303630

59304020

25/25

uc002jci.1	CSH2	4, 3
uc002jck.1	CSH2	4, 3
uc002jch.1	CSH2	4, 3

This probe is not considered a match. Chr gap bases = 365

205840_x_at_2

59349139

59349164

25/25

uc002jdi.1	GH1	3
uc002jdn.2	GH1	3
uc002jdj.1	GH1	3

59326853

59326878

23/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59312151

59312176

23/25

uc002jcl.1	GH2	3
uc002jcn.1	GH2	3
uc002jcm.1	GH2	3
uc002jcj.1	GH2	3
uc002jco.1	GH2	3

59303957

59303982

23/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

205840_x_at_3

59348962

59348987

25/25

uc002jdi.1	GH1	4
uc002jdn.2	GH1	4
uc002jdk.1	GH1	3
uc002jdj.1	GH1	4

59326675

59326700

24/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59311974

59311999

24/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	4
uc002jcm.1	GH2	4
uc002jcj.1	GH2	4
uc002jco.1	GH2	4

59303779

59303804

24/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

205840_x_at_4

59348936

59348961

25/25

uc002jdi.1	GH1	4
uc002jdn.2	GH1	4
uc002jdk.1	GH1	3
uc002jdj.1	GH1	4

205840_x_at_5

59348917

59348942

25/25

uc002jdi.1	GH1	4
uc002jdk.1	GH1	3
uc002jdj.1	GH1	4

59311929

59311954

24/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	4
uc002jcm.1	GH2	4
uc002jcj.1	GH2	4
uc002jco.1	GH2	4

205840_x_at_6

59348887

59348912

25/25

uc002jdi.1	GH1	4
uc002jdk.1	GH1	3
uc002jdj.1	GH1	4

205840_x_at_7

59348532

59348557

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340934

59340959

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326245

59326270

24/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303349

59303374

24/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

205840_x_at_8

59348492

59348517

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340894

59340919

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326205

59326230

24/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311504

59311529

24/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303309

59303334

24/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

205840_x_at_9

59348469

59348494

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59326182

59326207

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311481

59311506

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303286

59303311

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340871

59340896

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

205840_x_at_10

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

205840_x_at_11

59348330

59348355

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59303144

59303169

23/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3