Genomic Probe Mapping

Mapping of probe set 203807_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_020991
Chromosomal Location	chr17q24.2
UniGene ID	Hs.654390
Gene Symbol	CSH1, CSH2, GH1
Ensembl	ENSG00000136488, ENSG00000213218
Entrez Gene	1442, 1443, 2688
SwissProt	A6NFB4, A6NIT4, A8K6C2, P01241, P01243, P78451, Q0VDB1, Q6IYF0, Q6IYF1, Q6PF11, Q7KZ35
RefSeq Transcript ID	NM_000515, NM_001317, NM_020991, NM_022559, NM_022560, NM_022561, NM_022562, NM_022640, NM_022641, NM_022644, NM_022645

Annotation based on mapping results:

This probe is not unique and matches GH2, CSH1, CSH2, CSHL1.

Only 8/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 22 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211508_s_at, (22) 211739_x_at.

Affymetrix annotation for this probe: CSH2, GH1, CSH1.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

203807_x_at_1

59341579

59341604

25/25

uc002jda.1	CSHL1	3
uc002jde.1	CSHL1	1
uc002jdh.1	CSHL1	2
uc002jdg.1	CSHL1	2
uc002jdb.1	CSHL1	2

59326890

59326915

25/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59303994

59304019

25/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

203807_x_at_2

59341546

59341571

25/25

uc002jdf.1	CSHL1	2
uc002jdh.1	CSHL1	2
uc002jcz.1	CSHL1	3
uc002jdc.1	CSHL1	2
uc002jdg.1	CSHL1	2
uc002jdb.1	CSHL1	2
uc002jdd.1	CSHL1	3
uc002jda.1	CSHL1	3
uc002jde.1	CSHL1	1

59326857

59326882

25/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59303961

59303986

25/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

59312155

59312179

22/25

uc002jcl.1	GH2	3
uc002jcn.1	GH2	3
uc002jcm.1	GH2	3
uc002jcj.1	GH2	3
uc002jco.1	GH2	3

This probe is not considered a match. Only 22/25 matches found

203807_x_at_3

59326710

59326828

25/25

uc002jcq.1	CSH1	3, 2
uc002jct.1	CSH1	4, 3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3, 2
uc002jcu.1	CSH1	4, 3
uc002jcs.1	CSH1	4, 3
uc002jcr.1	CSH1	2, 1
uc002jcw.1	CSH1	4, 3

This probe is not considered a match. Chr gap bases = 93

59303814

59303932

25/25

uc002jci.1	CSH2	4, 3
uc002jck.1	CSH2	4, 3
uc002jch.1	CSH2	4, 3

This probe is not considered a match. Chr gap bases = 93

203807_x_at_4

59326675

59326700

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303779

59303804

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

59348962

59348987

24/25

uc002jdi.1	GH1	4
uc002jdn.2	GH1	4
uc002jdk.1	GH1	3
uc002jdj.1	GH1	4

59341364

59341389

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

59311974

59311999

23/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	4
uc002jcm.1	GH2	4
uc002jcj.1	GH2	4
uc002jco.1	GH2	4

203807_x_at_5

59326645

59326670

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303749

59303774

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

203807_x_at_6

59341297

59341322

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

59326608

59326633

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303712

59303737

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

203807_x_at_7

59326257

59326282

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303361

59303386

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348544

59348569

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340946

59340971

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

203807_x_at_8

59340894

59340919

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326205

59326230

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311504

59311529

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303309

59303334

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348492

59348517

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

203807_x_at_9

59348469

59348494

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59326182

59326207

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311481

59311506

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303286

59303311

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340871

59340896

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

203807_x_at_10

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

203807_x_at_11

59303212

59303237

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59326108

59326561

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4, 3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

This probe is not considered a match. Chr gap bases = 428