Genomic Probe Mapping

Mapping of probe set 206475_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_022640
Chromosomal Location	chr17q24.2
UniGene ID	Hs.654390
Gene Symbol	CSH1
Ensembl	---
Entrez Gene	1442
SwissProt	A6NFB4, A8K6C2, P01243, P78451, Q6PF11, Q7KZ35
RefSeq Transcript ID	NM_001317, NM_022640, NM_022641

Annotation based on mapping results:

This probe is not unique and matches GH2, CSH1, CSH2, CSHL1.

Only 7/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 22 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211508_s_at, (22) 211739_x_at.

Affymetrix annotation for this probe: CSH1.

Brainarray annotation for this probe: CSH1.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

206475_x_at_1

59326108

59326133

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59340797

59340822

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59348329

59348420

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

This probe is not considered a match. Chr gap bases = 66

59311341

59311432

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

This probe is not considered a match. Chr gap bases = 66

59303212

59303620

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

This probe is not considered a match. Chr gap bases = 383

206475_x_at_2

59326094

59326119

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

206475_x_at_3

59326488

59326513

25/25

uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcr.1	CSH1	2

59341177

59341202

24/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

59303592

59303617

24/25

uc002jci.1

CSH2

206475_x_at_4

59326451

59326476

25/25

uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcr.1	CSH1	2

59341140

59341165

24/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

59311750

59311775

24/25

uc002jcl.1

GH2

59303555

59303580

24/25

uc002jci.1

CSH2

59348738

59348763

23/25

uc002jdi.1	GH1	in intron
uc002jdm.1	GH1	in intron
uc002jdn.2	GH1	in intron
uc002jdk.1	GH1	in intron
uc002jdj.1	GH1	in intron
uc002jdl.1	GH1	in intron

206475_x_at_5

59348721

59348746

25/25

uc002jdi.1	GH1	in intron
uc002jdm.1	GH1	in intron
uc002jdn.2	GH1	in intron
uc002jdk.1	GH1	in intron
uc002jdj.1	GH1	in intron
uc002jdl.1	GH1	in intron

59341123

59341148

25/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

59326434

59326459

25/25

uc002jcy.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcr.1	CSH1	2

59303538

59303563

25/25

uc002jci.1

CSH2

59311733

59311758

24/25

uc002jcl.1

GH2

206475_x_at_6

59326416

59326441

25/25

uc002jcy.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcr.1	CSH1	2

59303520

59303545

25/25

uc002jci.1

CSH2

59348703

59348728

23/25

uc002jdi.1	GH1	in intron
uc002jdm.1	GH1	in intron
uc002jdn.2	GH1	in intron
uc002jdk.1	GH1	in intron
uc002jdj.1	GH1	in intron
uc002jdl.1	GH1	in intron

59341105

59341130

23/25

uc002jdf.1	CSHL1	3
uc002jde.1	CSHL1	2
uc002jdh.1	CSHL1	3
uc002jdg.1	CSHL1	3

59311715

59311740

23/25

uc002jcl.1

GH2

206475_x_at_7

59348594

59348619

25/25

uc002jdi.1	GH1	5
uc002jdl.1	GH1	3
uc002jdk.1	GH1	4
uc002jdm.1	GH1	2
uc002jdj.1	GH1	5

59326307

59326332

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311606

59311631

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303411

59303436

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340996

59341021

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

206475_x_at_8

59326257

59326282

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303361

59303386

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348544

59348569

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340946

59340971

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

206475_x_at_9

59340894

59340919

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326205

59326230

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311504

59311529

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303309

59303334

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348492

59348517

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

206475_x_at_10

59348469

59348494

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59326182

59326207

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311481

59311506

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303286

59303311

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340871

59340896

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

206475_x_at_11

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3