Genomic Probe Mapping

Mapping of probe set 202493_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	NM_001317
Chromosomal Location	chr17q24.2, chr5q13.2
UniGene ID	Hs.165762
Gene Symbol	CSH1, CSH2, FCHO2, GH1
Ensembl	ENSG00000136488
Entrez Gene	115548, 1442, 1443, 2688
SwissProt	A0JLQ4, A6NFB4, A8K6C2, B2RNQ9, P01241, P01243, P78451, Q0JRZ9, Q0VDB1, Q6IYF0, Q6IYF1, Q6PF11, Q7KZ35
RefSeq Transcript ID	NM_000515, NM_001317, NM_020991, NM_022559, NM_022560, NM_022561, NM_022562, NM_022640, NM_022641, NM_022644, NM_022645, NM_138782

Annotation based on mapping results:

This probe is not unique and matches CSH1, CSH2, CSHL1.

Only 8/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 21 alternative probes: (1) 202493_x_at, (2) 203807_x_at, (3) 205840_x_at, (4) 205958_x_at, (5) 206195_x_at, (6) 206475_x_at, (7) 206885_x_at, (8) 206886_x_at, (9) 207285_x_at, (10) 207770_x_at, (11) 208068_x_at, (12) 208069_x_at, (13) 208293_x_at, (14) 208294_x_at, (15) 208295_x_at, (16) 208341_x_at, (17) 208342_x_at, (18) 208356_x_at, (19) 208357_x_at, (20) 211151_x_at, (21) 211739_x_at.

Affymetrix annotation for this probe: CSH2, GH1, CSH1, FCHO2.

Brainarray annotation for this probe: CSH1.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr5

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
202493_x_at_1
202493_x_at_2
202493_x_at_3
202493_x_at_4
202493_x_at_5
202493_x_at_6
202493_x_at_7
202493_x_at_8
202493_x_at_9
202493_x_at_10	178024233	178024260	-	23/25		This probe is not considered a match. Chr gap bases = 4
202493_x_at_11

Mapping to chr17

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

202493_x_at_1

59341581

59341606

24/25

uc002jda.1	CSHL1	3
uc002jde.1	CSHL1	1
uc002jdh.1	CSHL1	2
uc002jdg.1	CSHL1	2
uc002jdb.1	CSHL1	2

59326892

59326917

24/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59303996

59304021

24/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

202493_x_at_2

59341546

59341571

25/25

uc002jdf.1	CSHL1	2
uc002jdh.1	CSHL1	2
uc002jcz.1	CSHL1	3
uc002jdc.1	CSHL1	2
uc002jdg.1	CSHL1	2
uc002jdb.1	CSHL1	2
uc002jdd.1	CSHL1	3
uc002jda.1	CSHL1	3
uc002jde.1	CSHL1	1

59326857

59326882

25/25

uc002jcq.1	CSH1	2
uc002jct.1	CSH1	3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	2
uc002jcu.1	CSH1	3
uc002jcs.1	CSH1	3
uc002jcr.1	CSH1	1
uc002jcw.1	CSH1	3

59303961

59303986

25/25

uc002jci.1	CSH2	3
uc002jck.1	CSH2	3
uc002jch.1	CSH2	3

59312155

59312179

22/25

uc002jcl.1	GH2	3
uc002jcn.1	GH2	3
uc002jcm.1	GH2	3
uc002jcj.1	GH2	3
uc002jco.1	GH2	3

This probe is not considered a match. Only 22/25 matches found

202493_x_at_3

59326710

59326828

25/25

uc002jcq.1	CSH1	3, 2
uc002jct.1	CSH1	4, 3
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3, 2
uc002jcu.1	CSH1	4, 3
uc002jcs.1	CSH1	4, 3
uc002jcr.1	CSH1	2, 1
uc002jcw.1	CSH1	4, 3

This probe is not considered a match. Chr gap bases = 93

59303814

59303932

25/25

uc002jci.1	CSH2	4, 3
uc002jck.1	CSH2	4, 3
uc002jch.1	CSH2	4, 3

This probe is not considered a match. Chr gap bases = 93

202493_x_at_4

59326645

59326670

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303749

59303774

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

202493_x_at_5

59341297

59341322

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	4
uc002jdc.1	CSHL1	3
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	3
uc002jdd.1	CSHL1	4
uc002jda.1	CSHL1	4
uc002jde.1	CSHL1	2

59326608

59326633

25/25

uc002jcq.1	CSH1	3
uc002jct.1	CSH1	4
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	3
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	4
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	4

59303712

59303737

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	4
uc002jch.1	CSH2	4

202493_x_at_6

59326257

59326282

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59303361

59303386

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348544

59348569

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340946

59340971

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

202493_x_at_7

59340894

59340919

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326205

59326230

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311504

59311529

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303309

59303334

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59348492

59348517

24/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

202493_x_at_8

59348469

59348494

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59326182

59326207

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311481

59311506

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303286

59303311

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

59340871

59340896

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

202493_x_at_9

59348441

59348466

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

59340843

59340868

25/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59326154

59326179

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcy.1	CSH1	3
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59311453

59311478

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

59303258

59303283

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

202493_x_at_10

59326108

59326133

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5

59340797

59340822

24/25

uc002jdf.1	CSHL1	3
uc002jdh.1	CSHL1	3
uc002jcz.1	CSHL1	5
uc002jdc.1	CSHL1	4
uc002jdg.1	CSHL1	3
uc002jdb.1	CSHL1	4
uc002jdd.1	CSHL1	5
uc002jda.1	CSHL1	5
uc002jde.1	CSHL1	2

59348329

59348420

25/25

uc002jdi.1	GH1	5
uc002jdm.1	GH1	2
uc002jdn.2	GH1	5
uc002jdk.1	GH1	4
uc002jdj.1	GH1	5
uc002jdl.1	GH1	3

This probe is not considered a match. Chr gap bases = 66

59311341

59311432

25/25

uc002jcl.1	GH2	4
uc002jcn.1	GH2	5
uc002jcm.1	GH2	5
uc002jco.1	GH2	5

This probe is not considered a match. Chr gap bases = 66

59303212

59303620

25/25

uc002jci.1	CSH2	4
uc002jck.1	CSH2	5
uc002jch.1	CSH2	5
uc002jcj.1	GH2	5
uc002jcg.1	CSH2	3

This probe is not considered a match. Chr gap bases = 383

202493_x_at_11

59326094

59326119

25/25

uc002jcq.1	CSH1	4
uc002jct.1	CSH1	5
uc002jcp.1	CSH1	4
uc002jcu.1	CSH1	4
uc002jcs.1	CSH1	5
uc002jcv.1	CSH1	3
uc002jcr.1	CSH1	2
uc002jcw.1	CSH1	5