Chordoma Project Supplementary Material

Help and Frequently Asked Questions

What are chordoma enriched genes?

Enriched genes are genes very highly expressed in chordoma when compared to a large panel of normal cells and tissues. This about the panel as being used to establish a distribution for each gene and chordoma is scored relatively to that distribution. Genes on the extreme will be very specific to chordoma.

The tissue names in the figure are cryptic. What do they mean?

The tissue and cell annotation can be found in the download section in the sample annotation file. The figures only show the top 100 scoring samples for normal, tumor and cell lines.

In the RNA-seq section, what are the controls provided by Nugen?

These controls are of unknown origin. They were provided by Nugen as an example of a successful sequencing run. They were used to make sure the data we obtained is consistent with high quality data produced by Nugen.

 

Design and Development by Yair Benita © 2012.