Chordoma Project Supplementary Material

Download Data

Body Atlas 1 (BA1), Affy U133plus2 microarrays

• GCRMA normalized body atlas 1 (R binary)
• Affymetrix present/absent calls for body atlas 1 (R binary)
• Probe Annotation (xls)
• sample annotation for body atlas 1 (xls)
• Gene Enrichment Matrix for body atlas 1, Normal tissues (R binary)
• Gene Enrichment Matrix for body atlas 1, tumors & cell lines (R binary)

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Boday Atlas 2 (BA2), Affy U133A microarrays

• GCRMA normalized body atlas 2 (R binary)
• Affymetrix present/absent calls for body atlas 2 (R binary)
• Probe Annotation (xls)
• sample annotation for body atlas 2 (xls)
• Gene Enrichment Matrix for body atlas 2, Normal tissues (R binary)

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RNA-sequencing

All files are in Fastq format with ribosomal RNA seqeunces removed.

chordoma

• Ch1.NoRibosome.fastq.gz
• Ch3.NoRibosome.fastq.gz
• Ch4.NoRibosome.fastq.gz
• Ch10.NoRibosome.fastq.gz
• Ch11.NoRibosome.fastq.gz
• Ch98.NoRibosome.fastq.gz. Note that this sample was processed using a different experimental protocol.

Notochord

• N1.NoRibosome.fastq.gz
• N2.NoRibosome.fastq.gz
• N3.NoRibosome.fastq.gz

Control provided by Nugen

• Nugen1.NoRibosome.fastq.gz
• Nugen2.NoRibosome.fastq.gz

Design and Development by Yair Benita © 2012.