Gene Enrichment Profiler

Mapping of probe set 212938_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	M20776
  Chromosomal Location	chr21q22.3
  UniGene ID	Hs.474053
  Gene Symbol	COL6A1
  Ensembl	ENSG00000142156
  Entrez Gene	1291
  SwissProt	P12109, Q05BT9, Q8TBN2
  RefSeq Transcript ID	NM_001848

• Annotation based on mapping results:

  This probe is unique to COL6A1.

  Only 9/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 5 alternative probes: (1) 212091_s_at, (2) 212937_s_at, (3) 212938_at, (4) 212940_at, (5) 213428_s_at.

  Affymetrix annotation for this probe: COL6A1.

  Brainarray annotation for this probe: COL6A1.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr21

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
212938_at_1	46237097	46237122	+	25/25	uc002zhu.1 COL6A1 19
212938_at_2	46237120	46237145	+	25/25	uc002zhu.1 COL6A1 19
212938_at_3	46237125	46237150	+	25/25	uc002zhu.1 COL6A1 19
212938_at_4
212938_at_5	46238515	46238540	+	25/25	uc002zhu.1 COL6A1 20
212938_at_6	46238521	46238546	+	25/25	uc002zhu.1 COL6A1 20
212938_at_7	46241770	46241795	+	25/25	uc002zhu.1 COL6A1 21
212938_at_8	46241772	46241797	+	25/25	uc002zhu.1 COL6A1 21
212938_at_9	46241779	46241804	+	25/25	uc002zhu.1 COL6A1 21
212938_at_10	46241783	46241808	+	25/25	uc002zhu.1 COL6A1 21
212938_at_11	46242759	46243247	+	25/25	uc002zhu.1 COL6A1 24, 25 uc010gqd.1 COL6A1 3, 4	This probe is not considered a match. Chr gap bases = 463

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