Gene Enrichment Profiler

Mapping of probe set 212937_s_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	M20776
  Chromosomal Location	chr21q22.3
  UniGene ID	Hs.474053
  Gene Symbol	COL6A1
  Ensembl	ENSG00000142156
  Entrez Gene	1291
  SwissProt	P12109, Q05BT9, Q8TBN2
  RefSeq Transcript ID	NM_001848

• Annotation based on mapping results:

  This probe is unique to COL6A1.

  Only 6/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 5 alternative probes: (1) 212091_s_at, (2) 212937_s_at, (3) 212938_at, (4) 212940_at, (5) 213428_s_at.

  Affymetrix annotation for this probe: COL6A1.

  Brainarray annotation for this probe: COL6A1.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr21

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
212937_s_at_1	46242072	46242097	+	25/25	uc002zhu.1 COL6A1 22 uc010gqd.1 COL6A1 1
212937_s_at_2	46242083	46242105	+	22/25	uc002zhu.1 COL6A1 22 uc010gqd.1 COL6A1 1	This probe is not considered a match. Only 22/25 matches found
212937_s_at_3	46242473	46242498	+	25/25	uc002zhu.1 COL6A1 23 uc010gqd.1 COL6A1 2
212937_s_at_4	46242478	46242503	+	25/25	uc002zhu.1 COL6A1 23 uc010gqd.1 COL6A1 2
212937_s_at_5	46243259	46243284	+	25/25	uc002zhu.1 COL6A1 25 uc010gqd.1 COL6A1 4
212937_s_at_6	46243287	46243505	+	25/25	uc002zhu.1 COL6A1 25, 26 uc010gqd.1 COL6A1 4, 5	This probe is not considered a match. Chr gap bases = 193
212937_s_at_7	46243494	46243515	+	21/25	uc002zhu.1 COL6A1 26 uc010gqd.1 COL6A1 5	This probe is not considered a match. Only 21/25 matches found
212937_s_at_8	46243501	46243526	+	25/25	uc002zhu.1 COL6A1 26 uc010gqd.1 COL6A1 5
212937_s_at_9	46243506	46243531	+	25/25	uc002zhu.1 COL6A1 26 uc010gqd.1 COL6A1 5
212937_s_at_10
212937_s_at_11

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