Genomic Probe Mapping

Mapping of probe set 211843_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	AF315325
Chromosomal Location	chr7q21-q22.1
UniGene ID	Hs.111944
Gene Symbol	CYP3A7
Ensembl	ENSG00000160870
Entrez Gene	1551
SwissProt	A4D288, P24462, Q6KGV3, Q9H241
RefSeq Transcript ID	NM_000765

Annotation based on mapping results:

This probe is not unique and matches CYP3A4, CYP3A7.

Only 6/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 5 alternative probes: (1) 205939_at, (2) 205998_x_at, (3) 205999_x_at, (4) 208367_x_at, (5) 211843_x_at.

Affymetrix annotation for this probe: CYP3A7.

Brainarray annotation for this probe: CYP3A7.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr7

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

211843_x_at_1

99197800

99197825

25/25

uc003urv.1	CYP3A4	11
uc003urw.1	CYP3A4	11

99144794

99144819

25/25

uc003uru.1

CYP3A7

211843_x_at_2

99297230

99297255

23/25

uc010lgi.1	CYP3A43	8
uc003urz.1	CYP3A43	11
uc003usb.1	CYP3A43	9
uc003usa.1	CYP3A43	12
uc003ury.1	CYP3A43	11
uc003urx.1	CYP3A43	11

99144736

99144761

25/25

uc003uru.1

CYP3A7

99088254

99088279

25/25

uc003urs.1	CYP3A5	2
uc003urq.1	CYP3A5	11
uc003urr.1	CYP3A5	12
uc003urp.1	CYP3A5	7

211843_x_at_3

99144631

99144656

25/25

uc003uru.1

CYP3A7

211843_x_at_4

99297367

99297387

20/25

uc010lgi.1	CYP3A43	8
uc003urz.1	CYP3A43	11
uc003usb.1	CYP3A43	9
uc003usa.1	CYP3A43	12
uc003ury.1	CYP3A43	11
uc003urx.1	CYP3A43	11

This probe is not considered a match. Only 20/25 matches found

99197605

99197630

25/25

uc003urv.1	CYP3A4	11
uc003urw.1	CYP3A4	11

99144599

99144624

24/25

uc003uru.1

CYP3A7

99088117

99088142

23/25

uc003urs.1	CYP3A5	2
uc003urq.1	CYP3A5	11
uc003urr.1	CYP3A5	12
uc003urp.1	CYP3A5	7

211843_x_at_5

99196486

99196511

25/25

uc003urv.1	CYP3A4	12
uc003urw.1	CYP3A4	12

99143479

99143504

25/25

uc003urn.2	ZNF498	8 (wrong strand)
uc003uru.1	CYP3A7	12

99085740

99085765

25/25

uc003urs.1	CYP3A5	3
uc003urq.1	CYP3A5	12
uc003urr.1	CYP3A5	13
uc010lgg.1	CYP3A5	2
uc003urp.1	CYP3A5	8

211843_x_at_6

99143432

99143457

25/25

uc003urn.2	ZNF498	8 (wrong strand)
uc003uru.1	CYP3A7	12

99196439

99196464

24/25

uc003urv.1	CYP3A4	12
uc003urw.1	CYP3A4	12

99085693

99085718

24/25

uc003urs.1	CYP3A5	3
uc003urq.1	CYP3A5	12
uc003urr.1	CYP3A5	13
uc010lgg.1	CYP3A5	2
uc003urp.1	CYP3A5	8

211843_x_at_7

99143394

99143419

25/25

uc003urn.2	ZNF498	8 (wrong strand)
uc003uru.1	CYP3A7	12

99196401

99196426

24/25

uc003urv.1	CYP3A4	12
uc003urw.1	CYP3A4	12

99085655

99085680

24/25

uc003urs.1	CYP3A5	3
uc003urq.1	CYP3A5	12
uc003urr.1	CYP3A5	13
uc010lgg.1	CYP3A5	2
uc003urp.1	CYP3A5	8

211843_x_at_8

99141133

99141157

24/25

uc003uru.1

CYP3A7

99193767

99193790

22/25

uc003urv.1	CYP3A4	13
uc003urw.1	CYP3A4	13

This probe is not considered a match. Only 22/25 matches found

211843_x_at_9

99141116

99141141

25/25

uc003uru.1

CYP3A7

211843_x_at_10

99131377

99131402

25/25

uc003urs.1	CYP3A5	in intron
uc003urn.2	ZNF498	in intron
uc010lgg.1	CYP3A5	in intron

99215623

99215648

24/25

uc003urv.1	CYP3A4	2
uc003urw.1	CYP3A4	2

99183880

99183905

23/25

211843_x_at_11

99183808

99183833

25/25

99131305

99131330

25/25

uc003urs.1	CYP3A5	in intron
uc003urn.2	ZNF498	in intron
uc010lgg.1	CYP3A5	in intron