Genomic Probe Mapping

Mapping of probe set 205999_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	AF182273
Chromosomal Location	chr7q21.1
UniGene ID	Hs.654391
Gene Symbol	CYP3A4
Ensembl	ENSG00000160868
Entrez Gene	1576
SwissProt	P08684, Q6GRK0, Q7Z2G5, Q7Z448, Q86SK2, Q86SK3, Q9BZM0
RefSeq Transcript ID	NM_017460

Annotation based on mapping results:

This probe is not unique and matches CYP3A4, CYP3A7.

All 11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 5 alternative probes: (1) 205939_at, (2) 205998_x_at, (3) 205999_x_at, (4) 208367_x_at, (5) 211843_x_at.

Affymetrix annotation for this probe: CYP3A4.

Brainarray annotation for this probe: CYP3A4.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr7

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

205999_x_at_1

99297328

99297352

22/25

uc010lgi.1	CYP3A43	8
uc003urz.1	CYP3A43	11
uc003usb.1	CYP3A43	9
uc003usa.1	CYP3A43	12
uc003ury.1	CYP3A43	11
uc003urx.1	CYP3A43	11

This probe is not considered a match. Only 22/25 matches found

99197644

99197669

25/25

uc003urv.1	CYP3A4	11
uc003urw.1	CYP3A4	11

99144641

99144663

21/25

uc003uru.1

CYP3A7

This probe is not considered a match. Only 21/25 matches found

205999_x_at_2

99297344

99297369

24/25

uc010lgi.1	CYP3A43	8
uc003urz.1	CYP3A43	11
uc003usb.1	CYP3A43	9
uc003usa.1	CYP3A43	12
uc003ury.1	CYP3A43	11
uc003urx.1	CYP3A43	11

99197628

99197653

25/25

uc003urv.1	CYP3A4	11
uc003urw.1	CYP3A4	11

99088140

99088165

24/25

uc003urs.1	CYP3A5	2
uc003urq.1	CYP3A5	11
uc003urr.1	CYP3A5	12
uc003urp.1	CYP3A5	7

99144622

99144647

23/25

uc003uru.1

CYP3A7

205999_x_at_3

99297367

99297387

20/25

uc010lgi.1	CYP3A43	8
uc003urz.1	CYP3A43	11
uc003usb.1	CYP3A43	9
uc003usa.1	CYP3A43	12
uc003ury.1	CYP3A43	11
uc003urx.1	CYP3A43	11

This probe is not considered a match. Only 20/25 matches found

99197605

99197630

25/25

uc003urv.1	CYP3A4	11
uc003urw.1	CYP3A4	11

99144599

99144624

24/25

uc003uru.1

CYP3A7

99088117

99088142

23/25

uc003urs.1	CYP3A5	2
uc003urq.1	CYP3A5	11
uc003urr.1	CYP3A5	12
uc003urp.1	CYP3A5	7

205999_x_at_4

99196489

99196514

25/25

uc003urv.1	CYP3A4	12
uc003urw.1	CYP3A4	12

99143482

99143507

25/25

uc003urn.2	ZNF498	8 (wrong strand)
uc003uru.1	CYP3A7	12

99085743

99085768

25/25

uc003urs.1	CYP3A5	3
uc003urq.1	CYP3A5	12
uc003urr.1	CYP3A5	13
uc010lgg.1	CYP3A5	2
uc003urp.1	CYP3A5	8

205999_x_at_5

99196474

99196499

25/25

uc003urv.1	CYP3A4	12
uc003urw.1	CYP3A4	12

99143467

99143492

25/25

uc003urn.2	ZNF498	8 (wrong strand)
uc003uru.1	CYP3A7	12

99085728

99085753

24/25

uc003urs.1	CYP3A5	3
uc003urq.1	CYP3A5	12
uc003urr.1	CYP3A5	13
uc010lgg.1	CYP3A5	2
uc003urp.1	CYP3A5	8

205999_x_at_6

99196400

99196425

25/25

uc003urv.1	CYP3A4	12
uc003urw.1	CYP3A4	12

99085654

99085679

25/25

uc003urs.1	CYP3A5	3
uc003urq.1	CYP3A5	12
uc003urr.1	CYP3A5	13
uc010lgg.1	CYP3A5	2
uc003urp.1	CYP3A5	8

99143393

99143417

24/25

uc003urn.2	ZNF498	8 (wrong strand)
uc003uru.1	CYP3A7	12

205999_x_at_7

99193765

99193790

25/25

uc003urv.1	CYP3A4	13
uc003urw.1	CYP3A4	13

99141132

99141157

23/25

uc003uru.1

CYP3A7

205999_x_at_8

99193746

99193771

25/25

uc003urv.1	CYP3A4	13
uc003urw.1	CYP3A4	13

99120753

99120778

25/25

uc003urs.1	CYP3A5	in intron
uc003urn.2	ZNF498	in intron
uc010lgg.1	CYP3A5	in intron

205999_x_at_9

123187891

123187914

22/25

This probe is not considered a match. Only 22/25 matches found

99193664

99193689

25/25

uc003urv.1	CYP3A4	13
uc003urw.1	CYP3A4	13

99120671

99120696

24/25

uc003urs.1	CYP3A5	in intron
uc003urn.2	ZNF498	in intron
uc010lgg.1	CYP3A5	in intron

99141032

99141057

23/25

uc003uru.1

CYP3A7

205999_x_at_10

99193571

99193596

25/25

uc003urv.1	CYP3A4	13
uc003urw.1	CYP3A4	13

205999_x_at_11

99193541

99193566

25/25

uc003urv.1	CYP3A4	13
uc003urw.1	CYP3A4	13

99140909

99140934

23/25

uc003uru.1

CYP3A7