Gene Enrichment Profiler

Mapping of probe set 208367_x_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	NM_000776
  Chromosomal Location	chr7q21.1
  UniGene ID	Hs.654391
  Gene Symbol	CYP3A4
  Ensembl	---
  Entrez Gene	1576
  SwissProt	P08684, Q6GRK0, Q7Z2G5, Q7Z448, Q86SK2, Q86SK3
  RefSeq Transcript ID	NM_017460

• Annotation based on mapping results:

  This probe is unique to CYP3A4.

  Only 8/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 4 alternative probes: (1) 205998_x_at, (2) 205999_x_at, (3) 208367_x_at, (4) 211843_x_at.

  Affymetrix annotation for this probe: CYP3A4.

  Brainarray annotation for this probe: CYP3A4.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr7

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
208367_x_at_1	99196400	99196425	-	25/25	uc003urv.1 CYP3A4 12 uc003urw.1 CYP3A4 12
	99085654	99085679	-	25/25	uc003urs.1 CYP3A5 3 uc003urq.1 CYP3A5 12 uc003urr.1 CYP3A5 13 uc010lgg.1 CYP3A5 2 uc003urp.1 CYP3A5 8
	99143393	99143417	-	24/25	uc003urn.2 ZNF498 8 (wrong strand) uc003uru.1 CYP3A7 12
208367_x_at_2	99193765	99193790	-	25/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13
	99141132	99141157	-	23/25	uc003uru.1 CYP3A7 13
208367_x_at_3	99193746	99193771	-	25/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13
	99120753	99120778	-	25/25	uc003urs.1 CYP3A5 in intron uc003urn.2 ZNF498 in intron uc010lgg.1 CYP3A5 in intron
208367_x_at_4	99193692	99193717	-	25/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13
	99141059	99141084	-	23/25	uc003uru.1 CYP3A7 13
208367_x_at_5	99193660	99193683	-	23/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13
	99120667	99120690	-	23/25	uc003urs.1 CYP3A5 in intron uc003urn.2 ZNF498 in intron uc010lgg.1 CYP3A5 in intron
	99141028	99141051	-	22/25	uc003uru.1 CYP3A7 13	This probe is not considered a match. Only 22/25 matches found
208367_x_at_6
208367_x_at_7
208367_x_at_8
208367_x_at_9	99193448	99193473	-	25/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13
	99140815	99140840	-	23/25	uc003uru.1 CYP3A7 13
208367_x_at_10	99193388	99193413	-	25/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13
	99140755	99140780	-	25/25	uc003uru.1 CYP3A7 13
	99120394	99120419	-	25/25	uc003urs.1 CYP3A5 in intron uc003urn.2 ZNF498 in intron uc010lgg.1 CYP3A5 in intron
208367_x_at_11	99193356	99193381	-	25/25	uc003urv.1 CYP3A4 13 uc003urw.1 CYP3A4 13

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