Gene Enrichment Profiler

Mapping of probe set 208213_s_at to genomic DNA

• This probe set contains 11 probes
• Affymetrix annotation for this probe set:
  

  Representative Public ID	NM_003471
  Chromosomal Location	chr3q26.1
  UniGene ID	Hs.654519
  Gene Symbol	KCNAB1
  Ensembl	ENSG00000169282
  Entrez Gene	7881
  SwissProt	A6NP06, A8K9H8, A8KAD4, Q14722, Q5MJQ3
  RefSeq Transcript ID	NM_003471, NM_172159, NM_172160

• Annotation based on mapping results:

  This probe is unique to KCNAB1.

  Only 7/11 probes within this probe set were perfectly matched to the annotated transcript.

  This gene has 4 alternative probes: (1) 208213_s_at, (2) 210078_s_at, (3) 210079_x_at, (4) 210471_s_at.

  Affymetrix annotation for this probe: KCNAB1.

  Brainarray annotation for this probe: KCNAB1.

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Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr3

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
208213_s_at_1	157716809	157716834	+	25/25	uc003far.2 KCNAB1 11 uc010hvt.1 KCNAB1 10 uc003fas.2 KCNAB1 11 uc003fat.2 KCNAB1 11
208213_s_at_2
208213_s_at_3	157724379	157724404	+	25/25	uc003far.2 KCNAB1 12 uc010hvt.1 KCNAB1 11 uc003fas.2 KCNAB1 12 uc003fat.2 KCNAB1 12
208213_s_at_4	157724410	157724430	+	20/25	uc003far.2 KCNAB1 12 uc010hvt.1 KCNAB1 11 uc003fas.2 KCNAB1 12 uc003fat.2 KCNAB1 12	This probe is not considered a match. Only 20/25 matches found
208213_s_at_5
208213_s_at_6	157731936	157731961	+	25/25	uc003far.2 KCNAB1 13 uc010hvt.1 KCNAB1 12 uc003fas.2 KCNAB1 13 uc003fat.2 KCNAB1 13
208213_s_at_7	157737136	157737156	+	20/25	uc003far.2 KCNAB1 14 uc010hvt.1 KCNAB1 13 uc003fas.2 KCNAB1 14 uc003fat.2 KCNAB1 14	This probe is not considered a match. Only 20/25 matches found
208213_s_at_8	157737181	157737206	+	25/25	uc003far.2 KCNAB1 14 uc010hvt.1 KCNAB1 13 uc003fas.2 KCNAB1 14 uc003fat.2 KCNAB1 14
208213_s_at_9	157737236	157737261	+	25/25	uc003far.2 KCNAB1 14 uc010hvt.1 KCNAB1 13 uc003fas.2 KCNAB1 14 uc003fat.2 KCNAB1 14
	149183978	149184360	-	25/25		This probe is not considered a match. Chr gap bases = 357
208213_s_at_10	157737261	157737286	+	25/25	uc003far.2 KCNAB1 14 uc010hvt.1 KCNAB1 13 uc003fas.2 KCNAB1 14 uc003fat.2 KCNAB1 14
208213_s_at_11	157737294	157737319	+	25/25	uc003far.2 KCNAB1 14 uc010hvt.1 KCNAB1 13 uc003fas.2 KCNAB1 14 uc003fat.2 KCNAB1 14

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