Genomic Probe Mapping

Mapping of probe set AFFX-TrpnX-M_at to genomic DNA

This probe set contains 20 probes
Affymetrix annotation for this probe set:
Representative Public ID AFFX-TrpnX-M
Chromosomal Location ---
UniGene ID ---
Gene Symbol ---
Ensembl ---
Entrez Gene ---
SwissProt P03947, P03963, P03964, P07600, P07601, P17731, P20167
RefSeq Transcript ID ---
Annotation based on mapping results:
This is a control probe.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr2

Probe name	Start	End	Strand	Match	Gene match (UCSC ID, Symbol, Exons)	Notes
AFFX-TrpnX-M_at_1
AFFX-TrpnX-M_at_2
AFFX-TrpnX-M_at_3
AFFX-TrpnX-M_at_4
AFFX-TrpnX-M_at_5
AFFX-TrpnX-M_at_6
AFFX-TrpnX-M_at_7
AFFX-TrpnX-M_at_8
AFFX-TrpnX-M_at_9
AFFX-TrpnX-M_at_10
AFFX-TrpnX-M_at_11
AFFX-TrpnX-M_at_12
AFFX-TrpnX-M_at_13
AFFX-TrpnX-M_at_14
AFFX-TrpnX-M_at_15
AFFX-TrpnX-M_at_16
AFFX-TrpnX-M_at_17
AFFX-TrpnX-M_at_18	192487854	192488032	+	25/25		This probe is not considered a match. Chr gap bases = 153
AFFX-TrpnX-M_at_19
AFFX-TrpnX-M_at_20

Mapping to chr5

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

AFFX-TrpnX-M_at_1

AFFX-TrpnX-M_at_2

AFFX-TrpnX-M_at_3

15601578

15602038

25/25

uc003jfn.1

FBXL7

in intron

This probe is not considered a match. Chr gap bases = 435

AFFX-TrpnX-M_at_4

AFFX-TrpnX-M_at_5

AFFX-TrpnX-M_at_6

AFFX-TrpnX-M_at_7

AFFX-TrpnX-M_at_8

AFFX-TrpnX-M_at_9

AFFX-TrpnX-M_at_10

176228541

176228568

24/25

uc010jkg.1	UNC5A	6 (wrong strand)
uc003mex.1	UNC5A	5 (wrong strand)
uc003mey.1	UNC5A	5 (wrong strand)

AFFX-TrpnX-M_at_11

AFFX-TrpnX-M_at_12

AFFX-TrpnX-M_at_13

AFFX-TrpnX-M_at_14

AFFX-TrpnX-M_at_15

AFFX-TrpnX-M_at_16

AFFX-TrpnX-M_at_17

AFFX-TrpnX-M_at_18

AFFX-TrpnX-M_at_19

AFFX-TrpnX-M_at_20

Mapping to chr11