Genomic Probe Mapping

Mapping of probe set 211100_x_at to genomic DNA

This probe set contains 11 probes

Affymetrix annotation for this probe set:

Representative Public ID	U82278
Chromosomal Location	chr19q13.4
UniGene ID	Hs.655593
Gene Symbol	LILRA2
Ensembl	ENSG00000187095
Entrez Gene	11027
SwissProt	A8MZH0, Q8N149, Q99702
RefSeq Transcript ID	NM_001130917, NM_006866

Annotation based on mapping results:

This probe is not unique and matches LILRA2, LILRA4.

Only 10/11 probes within this probe set were perfectly matched to the annotated transcript.

This gene has 5 alternative probes: (1) 207857_at, (2) 210313_at, (3) 211100_x_at, (4) 211101_x_at, (5) 211102_s_at.

Affymetrix annotation for this probe: LILRA2.

Brainarray annotation for this probe: LILRA2.

Probes matching to Affy annotated chromosome using BLAT (2 mismatches allowed):

Mapping to chr19

Probe name

Start

End

Strand

Match

Gene match (UCSC ID, Symbol, Exons)

Notes

211100_x_at_1

59779141

59779166

25/25

uc010ern.1	LILRA2	7
uc002qgg.2	LILRA2	6
uc010ero.1	LILRA2	5
uc002qgf.1	LILRA2	6

59913756

59913781

24/25

uc002qgs.1	LILRP2	1
uc002qgt.1	LILRP2	5

59901842

59901867

24/25

59867501

59867526

24/25

uc002qgq.1	LILRB4	4
uc010ers.1	LILRB4	3
uc002qgr.1	LILRB4	4
uc010ert.1	LILRB4	4
uc002qgp.1	LILRB4	4
uc010eru.1	LILRB4	3

59836334

59836359

24/25

uc002qgm.1	LILRB1	7
uc010err.1	LILRB1	6
uc002qgl.1	LILRB1	7
uc002qgj.1	LILRB1	8
uc010erq.1	LILRB1	6
uc002qgk.1	LILRB1	7

59799521

59799546

24/25

uc002qgh.1

LILRA1

59493960

59493985

24/25

uc010erk.1	LILRA3	6
uc002qfd.1	LILRA3	6

59474147

59474172

24/25

uc002qfb.1	LILRB2	7
uc010eri.1	LILRB2	6
uc010erj.1	LILRB2	6
uc002qfc.1	LILRB2	7

59450631

59450656

24/25

uc002qey.1	LILRB5	6
uc002qfa.1	LILRB5	3
uc002qex.1	LILRB5	6
uc002qez.1	LILRB5	5

59436183

59436208

24/25

uc002qet.2	LILRA6	6
uc002qem.1	LILRA6	6
uc002qen.1	LILRB3	6
uc002qeu.1	LILRA6	6
uc002qek.1	LILRA6	6
uc002qev.1	LILRA6	3
uc002qel.1	LILRA6	6

59416431

59416456

24/25

uc002qei.1	LILRB3	6
uc002qef.1	LILRB3	6
uc002qeh.1	LILRB3	6
uc002qeq.1	LILRB3	6
uc002qej.1	LILRB3	7
uc002qep.1	LILRB3	6
uc002qeg.1	LILRB3	6
uc002qeo.1	LILRB3	6
uc010erh.1	LILRB3	6
uc002qes.1	LILRB3	6
uc002qee.1	LILRB3	6
uc002qer.1	LILRB3	6

59540145

59540170

23/25

uc002qfj.1	LILRA4	6
uc002qfi.1	LILRA4	5

211100_x_at_2

59779242

59779267

25/25

uc010ern.1	LILRA2	7
uc002qgg.2	LILRA2	6
uc010ero.1	LILRA2	5
uc002qgf.1	LILRA2	6

59913857

59913882

24/25

uc002qgs.1	LILRP2	1
uc002qgt.1	LILRP2	5

211100_x_at_3

59779259

59779284

25/25

uc010ern.1	LILRA2	7
uc002qgg.2	LILRA2	6
uc010ero.1	LILRA2	5
uc002qgf.1	LILRA2	6

59836452

59836477

24/25

uc002qgm.1	LILRB1	7
uc010err.1	LILRB1	6
uc002qgl.1	LILRB1	7
uc002qgj.1	LILRB1	8
uc010erq.1	LILRB1	6
uc002qgk.1	LILRB1	7

59913874

59913899

23/25

uc002qgs.1	LILRP2	1
uc002qgt.1	LILRP2	5

59901960

59901985

23/25

59867619

59867644

23/25

uc002qgq.1	LILRB4	4
uc010ers.1	LILRB4	3
uc002qgr.1	LILRB4	4
uc010ert.1	LILRB4	4
uc002qgp.1	LILRB4	4
uc010eru.1	LILRB4	3

59540027

59540052

23/25

uc002qfj.1	LILRA4	6
uc002qfi.1	LILRA4	5

59493842

59493867

23/25

uc010erk.1	LILRA3	6
uc002qfd.1	LILRA3	6

59474029

59474054

23/25

uc002qfb.1	LILRB2	7
uc010eri.1	LILRB2	6
uc010erj.1	LILRB2	6
uc002qfc.1	LILRB2	7

59436065

59436090

23/25

uc002qet.2	LILRA6	6
uc002qem.1	LILRA6	6
uc002qen.1	LILRB3	6
uc002qeu.1	LILRA6	6
uc002qek.1	LILRA6	6
uc002qev.1	LILRA6	3
uc002qel.1	LILRA6	6

59416313

59416338

23/25

uc002qei.1	LILRB3	6
uc002qef.1	LILRB3	6
uc002qeh.1	LILRB3	6
uc002qeq.1	LILRB3	6
uc002qej.1	LILRB3	7
uc002qep.1	LILRB3	6
uc002qeg.1	LILRB3	6
uc002qeo.1	LILRB3	6
uc010erh.1	LILRB3	6
uc002qes.1	LILRB3	6
uc002qee.1	LILRB3	6
uc002qer.1	LILRB3	6

211100_x_at_4

59779303

59779328

25/25

uc010ern.1	LILRA2	7
uc002qgg.2	LILRA2	6
uc010ero.1	LILRA2	5
uc002qgf.1	LILRA2	6

59913918

59913943

24/25

uc002qgs.1	LILRP2	1
uc002qgt.1	LILRP2	5

211100_x_at_5

211100_x_at_6

59790316

59790339

23/25

uc002qgg.2

LILRA2

59916238

59916260

21/25

uc002qgs.1	LILRP2	1
uc002qgt.1	LILRP2	6

This probe is not considered a match. Only 21/25 matches found

211100_x_at_7

59790490

59790515

25/25

uc010ern.1	LILRA2	9
uc002qgg.2	LILRA2	8
uc010ero.1	LILRA2	6
uc002qgf.1	LILRA2	7

59916413

59916436

23/25

uc002qgs.1	LILRP2	1
uc002qgt.1	LILRP2	7

59803979

59804002

23/25

uc002qgh.1

LILRA1

59489805

59489828

23/25

uc002qew.1

LILRA6

in intron

59536821

59536846

23/25

uc002qfj.1	LILRA4	8
uc002qfi.1	LILRA4	7

211100_x_at_8

59790512

59790537

25/25

uc010ern.1	LILRA2	9
uc002qgg.2	LILRA2	8
uc010ero.1	LILRA2	6
uc002qgf.1	LILRA2	7

59803999

59804021

22/25

uc002qgh.1

LILRA1

This probe is not considered a match. Only 22/25 matches found

59904381

59904406

23/25

59536799

59536824

25/25

uc002qfj.1	LILRA4	8
uc002qfi.1	LILRA4	7

59434731

59434753

22/25

uc002qet.2	LILRA6	8
uc002qev.1	LILRA6	4
uc002qeu.1	LILRA6	8

This probe is not considered a match. Only 22/25 matches found

59510600

59510622

21/25

uc002qfe.1	LILRA5	7
uc002qff.1	LILRA5	6

This probe is not considered a match. Only 21/25 matches found

59489786

59489808

21/25

uc002qew.1

LILRA6

in intron

This probe is not considered a match. Only 21/25 matches found

211100_x_at_9

59804042

59804067

25/25

uc002qgh.1

LILRA1

59790555

59790580

25/25

uc010ern.1	LILRA2	9
uc002qgg.2	LILRA2	8
uc010ero.1	LILRA2	6
uc002qgf.1	LILRA2	7

59904424

59904449

23/25

59536756

59536781

23/25

uc002qfj.1	LILRA4	8
uc002qfi.1	LILRA4	7

59434685

59434710

23/25

uc002qet.2	LILRA6	8
uc002qev.1	LILRA6	4
uc002qeu.1	LILRA6	8

211100_x_at_10

59778808

59778832

24/25

uc010ern.1	LILRA2	6
uc002qgg.2	LILRA2	5
uc010ero.1	LILRA2	4
uc002qgf.1	LILRA2	5

60057290

60057314

23/25

uc010esh.1	KIR3DL2	4
uc002qho.2	KIR3DL2	4

59901513

59901537

23/25

59875327

59875351

23/25

59836000

59836024

23/25

uc002qgm.1	LILRB1	6
uc010err.1	LILRB1	5
uc002qgl.1	LILRB1	6
uc002qgj.1	LILRB1	7
uc010erq.1	LILRB1	5
uc002qgk.1	LILRB1	6

59799189

59799213

23/25

uc002qgh.1

LILRA1

59755328

59755352

23/25

59738899

59738923

22/25

uc002qge.1

KIR3DX1

This probe is not considered a match. Only 22/25 matches found

59725001

59725025

22/25

This probe is not considered a match. Only 22/25 matches found

59494293

59494317

24/25

uc010erk.1	LILRA3	5
uc002qfd.1	LILRA3	5

59474477

59474501

24/25

uc002qfb.1	LILRB2	6
uc010eri.1	LILRB2	5
uc010erj.1	LILRB2	5
uc002qfc.1	LILRB2	6

59540481

59540505

23/25

uc002qfj.1	LILRA4	5
uc002qfi.1	LILRA4	4

59450959

59450983

23/25

uc002qey.1	LILRB5	5
uc002qfa.1	LILRB5	2
uc002qex.1	LILRB5	5
uc002qez.1	LILRB5	4

211100_x_at_11

59779083

59779108

25/25

uc010ern.1	LILRA2	7
uc002qgg.2	LILRA2	6
uc010ero.1	LILRA2	5
uc002qgf.1	LILRA2	6

59836276

59836305

25/25

uc002qgm.1	LILRB1	7
uc010err.1	LILRB1	6
uc002qgl.1	LILRB1	7
uc002qgj.1	LILRB1	8
uc010erq.1	LILRB1	6
uc002qgk.1	LILRB1	7

This probe is not considered a match. Chr gap bases = 4